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|
## SQL Table Sizes
SELECT
table_name,
pg_size_pretty(table_size) AS table_size,
pg_size_pretty(indexes_size) AS indexes_size,
pg_size_pretty(total_size) AS total_size
FROM (
SELECT
table_name,
pg_table_size(table_name) AS table_size,
pg_indexes_size(table_name) AS indexes_size,
pg_total_relation_size(table_name) AS total_size
FROM (
SELECT ('"' || table_schema || '"."' || table_name || '"') AS table_name
FROM information_schema.tables
WHERE table_schema = 'public'
) AS all_tables
ORDER BY total_size DESC
) AS pretty_sizes;
table_name | table_size | indexes_size | total_size
-------------------------------+------------+--------------+------------
"public"."cdx" | 44 GB | 45 GB | 89 GB
"public"."grobid" | 66 GB | 8127 MB | 74 GB
"public"."ingest_request" | 34 GB | 40 GB | 73 GB
"public"."ingest_file_result" | 28 GB | 44 GB | 72 GB
"public"."grobid_shadow" | 64 GB | 6902 MB | 71 GB
"public"."file_meta" | 33 GB | 30 GB | 63 GB
"public"."shadow" | 9111 MB | 10204 MB | 19 GB
"public"."fatcat_file" | 12 GB | 6656 MB | 18 GB
"public"."pdf_meta" | 12 GB | 2924 MB | 15 GB
"public"."pdftrio" | 618 MB | 432 MB | 1051 MB
"public"."petabox" | 403 MB | 594 MB | 997 MB
(11 rows)
## File Metadata
Counts and total file size:
SELECT COUNT(*) as total_count, SUM(size_bytes) as total_size FROM file_meta;
total_count | total_size
-------------+-----------------
167021210 | 221982345333674
(1 row)
Top mimetypes:
SELECT mimetype, COUNT(*) FROM file_meta GROUP BY mimetype ORDER BY COUNT DESC LIMIT 10;
mimetype | count
-------------------------------+-----------
application/pdf | 166765214
application/octet-stream | 155517
application/xml | 42170
text/html | 18708
text/plain | 15990
application/gzip | 6491
| 6036
application/postscript | 4912
application/vnd.ms-powerpoint | 1672
application/msword | 921
(10 rows)
Missing full metadata:
SELECT COUNT(*) FROM file_meta WHERE sha256hex IS NULL;
count
-------
62960
(1 row)
## CDX
Total and unique-by-sha1 counts:
SELECT COUNT(DISTINCT sha1hex) as unique_sha1, COUNT(*) as total FROM cdx;
unique_sha1 | total
-------------+-----------
102123051 | 126550160
(1 row)
mimetype counts:
SELECT mimetype, COUNT(*) FROM cdx GROUP BY mimetype ORDER BY COUNT(*) DESC LIMIT 25;
mimetype | count
----------------------------+-----------
application/pdf | 116885565
warc/revisit | 7951816
text/xml | 519042
application/octet-stream | 327639
text/html | 295725
unk | 172491
application/postscript | 81095
application/save | 80900
binary/octet-stream | 61783
text/plain | 33684
image/pdf | 32856
application/x-download | 32418
application/download | 27672
application/force-download | 10892
multipart/form-data | 5750
application/x-msdownload | 3832
application/x-octetstream | 3516
application | 3499
.pdf | 3038
application/x-pdf | 2701
application/binary | 1322
pdf | 1232
file/unknown | 1199
application/pdf' | 1192
file | 979
(25 rows)
## GROBID
Counts:
SELECT COUNT(*) AS total_files, COUNT(DISTINCT fatcat_release) AS unique_releases FROM grobid;
total_files | unique_releases
-------------+-----------------
101494314 | 18919012
(1 row)
Status?
SELECT status_code, COUNT(*) FROM grobid GROUP BY status_code ORDER BY COUNT DESC LIMIT 10;
status_code | count
-------------+----------
200 | 93730358
500 | 7759103
-4 | 4683
503 | 150
(4 rows)
What version used?
SELECT grobid_version, COUNT(*) FROM grobid WHERE status_code = 200 GROUP BY grobid_version ORDER BY COUNT DESC LIMIT 10;
grobid_version | count
----------------+----------
0.5.5-fatcat | 80838234
| 12892145
(2 rows)
## Petabox
Counts:
SELECT COUNT(DISTINCT sha1hex) as unique_sha1, COUNT(*) as total FROM petabox;
unique_sha1 | total
-------------+---------
2868825 | 2887834
(1 row)
## Ingests
Requests by source:
SELECT ingest_type, link_source, COUNT(*) FROM ingest_request GROUP BY ingest_type, link_source ORDER BY COUNT DESC LIMIT 25;
ingest_type | link_source | count
-------------+-----------------+----------
pdf | oai | 51185088
pdf | mag | 35015357
pdf | unpaywall | 27653003
pdf | doi | 17362763
pdf | pmc | 2248854
pdf | arxiv | 835400
pdf | cnki_covid19 | 2034
pdf | wanfang_covid19 | 975
pdf | spn | 197
(9 rows)
SELECT ingest_type, link_source, ingest_request_source, COUNT(*) FROM ingest_request GROUP BY ingest_type, link_source, ingest_request_source ORDER BY COUNT DESC LIMIT 25;
ingest_type | link_source | ingest_request_source | count
-------------+-----------------+-------------------------+----------
pdf | oai | metha-bulk | 51185088
pdf | mag | mag-corpus | 35015357
pdf | unpaywall | unpaywall | 27653003
pdf | doi | fatcat-ingest | 8399261
pdf | doi | fatcat-changelog | 5449349
pdf | doi | fatcat-ingest-container | 3515873
pdf | pmc | fatcat-ingest-container | 2028825
pdf | arxiv | fatcat-ingest | 634665
pdf | pmc | fatcat-ingest | 210453
pdf | arxiv | fatcat-changelog | 200707
pdf | pmc | fatcat-changelog | 9582
pdf | cnki_covid19 | scrape-covid19 | 2034
pdf | wanfang_covid19 | scrape-covid19 | 975
pdf | spn | savepapernow-web | 197
pdf | arxiv | fatcat-ingest-container | 26
pdf | doi | savepapernow-web | 21
pdf | arxiv | savepapernow-web | 2
(17 rows)
Uncrawled requests by source:
# TODO: verify this?
SELECT ingest_request.ingest_type, ingest_request.link_source, COUNT(*)
FROM ingest_request
LEFT JOIN ingest_file_result
ON ingest_request.base_url = ingest_file_result.base_url
AND ingest_request.ingest_type = ingest_file_result.ingest_type
WHERE ingest_file_result.base_url IS NULL
GROUP BY ingest_request.ingest_type, ingest_request.link_source ORDER BY COUNT DESC LIMIT 25;
ingest_type | link_source | count
-------------+-------------+--------
pdf | mag | 170304
pdf | oai | 15287
pdf | unpaywall | 1
(3 rows)
Results by source:
SELECT
ingest_request.ingest_type,
ingest_request.link_source,
COUNT(*) as attempts,
COUNT(CASE WHEN ingest_file_result.hit THEN 1 END) hits,
ROUND(1.0 * COUNT(CASE WHEN ingest_file_result.hit THEN 1 END) / COUNT(*), 3) as fraction
FROM ingest_request
LEFT JOIN ingest_file_result
ON ingest_request.base_url = ingest_file_result.base_url
AND ingest_request.ingest_type = ingest_file_result.ingest_type
AND ingest_file_result.ingest_type IS NOT NULL
GROUP BY ingest_request.ingest_type, ingest_request.link_source ORDER BY attempts DESC LIMIT 35;
ingest_type | link_source | attempts | hits | fraction
-------------+-----------------+----------+----------+----------
pdf | oai | 51185088 | 14144314 | 0.276
pdf | mag | 35015357 | 24811947 | 0.709
pdf | unpaywall | 27653003 | 22302629 | 0.807
pdf | doi | 17363369 | 3533568 | 0.204
pdf | pmc | 2248860 | 1713197 | 0.762
pdf | arxiv | 835400 | 685219 | 0.820
pdf | cnki_covid19 | 2034 | 0 | 0.000
pdf | wanfang_covid19 | 975 | 764 | 0.784
pdf | spn | 197 | 138 | 0.701
(9 rows)
Ingest result by status:
SELECT ingest_type, status, COUNT(*) FROM ingest_file_result GROUP BY ingest_type, status ORDER BY COUNT DESC LIMIT 25;
ingest_type | status | count
-------------+-------------------------------------+----------
pdf | success | 58265365
pdf | no-pdf-link | 27216435
pdf | no-capture | 21982611
pdf | redirect-loop | 8457469
pdf | terminal-bad-status | 2695023
pdf | link-loop | 2209672
pdf | wrong-mimetype | 767508
pdf | gateway-timeout | 548870
pdf | cdx-error | 391611
pdf | skip-url-blocklist | 220661
pdf | null-body | 182215
pdf | wayback-error | 146869
pdf | spn2-cdx-lookup-failure | 107229
pdf | spn-error | 85128
pdf | invalid-host-resolution | 37352
pdf | petabox-error | 32490
pdf | spn2-error | 29212
pdf | spn-remote-error | 27927
pdf | other-mimetype | 2305
pdf | bad-redirect | 1524
pdf | spn2-error:job-failed | 1521
pdf | timeout | 842
pdf | spn2-error:soft-time-limit-exceeded | 793
pdf | redirects-exceeded | 748
pdf | spn2-error:invalid-url-syntax | 417
(25 rows)
Failed ingest by terminal status code:
SELECT ingest_type, terminal_status_code, COUNT(*)
FROM ingest_file_result
WHERE hit = false
GROUP BY ingest_type, terminal_status_code
ORDER BY COUNT DESC
LIMIT 25;
ingest_type | terminal_status_code | count
-------------+----------------------+----------
pdf | 200 | 34064937
pdf | | 20514531
pdf | 301 | 7271700
pdf | 302 | 720632
pdf | 503 | 712697
pdf | 400 | 444209
pdf | 404 | 331495
pdf | 403 | 323030
pdf | 401 | 259327
pdf | 500 | 236122
pdf | 303 | 101609
pdf | 429 | 47738
pdf | 502 | 36183
pdf | 420 | 26603
pdf | 509 | 15113
pdf | 409 | 14790
pdf | 999 | 8996
pdf | 307 | 3769
pdf | 308 | 3422
pdf | 202 | 3228
pdf | 520 | 2058
pdf | 410 | 1734
pdf | 521 | 1033
pdf | 504 | 868
pdf | 505 | 424
(25 rows)
## Fatcat Files
Count of PDF files that GROBID processed and matched to a release (via
glutton), but no PDF in `fatcat_file`:
SELECT COUNT(*) as total_count, COUNT(DISTINCT grobid.fatcat_release) as release_count
FROM grobid
LEFT JOIN fatcat_file ON grobid.sha1hex = fatcat_file.sha1hex
WHERE fatcat_file.sha1hex IS NULL
AND grobid.fatcat_release IS NOT NULL;
total_count | release_count
-------------+---------------
6600758 | 5213294
(1 row)
|
