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import json
import struct
import pytest
import responses
from test_wayback import cdx_client, wayback_client # noqa:F401
from sandcrawler import BlackholeSink, CdxLinePusher, GrobidClient, GrobidWorker
FAKE_PDF_BYTES = b"%PDF SOME JUNK" + struct.pack("!q", 112853843)
with open("tests/files/23b29ea36382680716be08fc71aa81bd226e8a85.xml", "rb") as f:
REAL_TEI_XML = f.read()
@pytest.fixture
def grobid_client():
client = GrobidClient(
host_url="http://dummy-grobid",
)
return client
@responses.activate
def test_grobid_503(grobid_client):
status = b'{"status": "done broke due to 503"}'
responses.add(
responses.POST,
"http://dummy-grobid/api/processFulltextDocument",
status=503,
body=status,
)
resp = grobid_client.process_fulltext(FAKE_PDF_BYTES)
# grobid gets POST 1x times
assert len(responses.calls) == 1
assert resp["status_code"] == 503
assert resp["status"] == "error"
@responses.activate
def test_grobid_success_iso_8859(grobid_client):
"""
This might have been the old GROBID behavior, with default encoding? Can't really remember.
"""
responses.add(
responses.POST,
"http://dummy-grobid/api/processFulltextDocument",
status=200,
body=REAL_TEI_XML,
content_type="text/xml",
)
resp = grobid_client.process_fulltext(FAKE_PDF_BYTES)
# grobid gets POST 1x times
assert len(responses.calls) == 1
assert resp["status_code"] == 200
assert resp["status"] == "success"
# print(type(resp['tei_xml']))
# print(type(REAL_TEI_XML))
assert resp["tei_xml"] == REAL_TEI_XML.decode("ISO-8859-1")
@responses.activate
def test_grobid_success(grobid_client):
responses.add(
responses.POST,
"http://dummy-grobid/api/processFulltextDocument",
status=200,
body=REAL_TEI_XML,
content_type="application/xml; charset=UTF-8",
)
resp = grobid_client.process_fulltext(FAKE_PDF_BYTES)
# grobid gets POST 1x times
assert len(responses.calls) == 1
assert resp["status_code"] == 200
assert resp["status"] == "success"
assert resp["tei_xml"] == REAL_TEI_XML.decode("UTF-8")
@responses.activate
def test_grobid_worker_cdx(grobid_client, wayback_client): # noqa: F811
sink = BlackholeSink()
worker = GrobidWorker(grobid_client, wayback_client, sink=sink)
responses.add(
responses.POST,
"http://dummy-grobid/api/processFulltextDocument",
status=200,
body=REAL_TEI_XML,
content_type="text/xml",
)
with open("tests/files/example.cdx", "r") as cdx_file:
pusher = CdxLinePusher(
worker,
cdx_file,
filter_http_statuses=[200, 226],
filter_mimetypes=["application/pdf"],
)
pusher_counts = pusher.run()
assert pusher_counts["total"]
assert pusher_counts["pushed"] == 7
assert pusher_counts["pushed"] == worker.counts["total"]
assert len(responses.calls) == worker.counts["total"]
@responses.activate
def test_grobid_refs_978(grobid_client):
with open("tests/files/crossref_api_work_978-3-030-64953-1_4.json", "r") as f:
crossref_work = json.loads(f.read())
with open("tests/files/grobid_refs_978-3-030-64953-1_4.tei.xml", "rb") as f:
xml_bytes = f.read()
assert "\u2013".encode("utf-8") in xml_bytes
responses.add(
responses.POST,
"http://dummy-grobid/api/processCitationList",
status=200,
body=xml_bytes,
content_type="application/xml; charset=UTF-8",
)
refs_row = grobid_client.crossref_refs(crossref_work)
# grobid gets POST 1x times
assert len(responses.calls) == 1
assert refs_row["source"] == "crossref"
assert refs_row["source_id"] == "10.1007/978-3-030-64953-1_4"
assert refs_row["source_ts"] == "2021-05-10T22:08:45Z"
refs = refs_row["refs_json"]
assert len(refs) == 3
assert set([r["id"] for r in refs]) == set(["4_CR93", "4_CR193", "4_CR210"])
# test case of no references
crossref_work["message"]["reference"] = []
refs_row = grobid_client.crossref_refs(crossref_work)
assert refs_row["source"] == "crossref"
assert refs_row["source_id"] == "10.1007/978-3-030-64953-1_4"
assert refs_row["source_ts"] == "2021-05-10T22:08:45Z"
assert len(refs_row["refs_json"]) == 0
# test that 'message' works also
refs_row = grobid_client.crossref_refs(crossref_work["message"])
assert refs_row["source"] == "crossref"
assert refs_row["source_id"] == "10.1007/978-3-030-64953-1_4"
assert refs_row["source_ts"] == "2021-05-10T22:08:45Z"
assert len(refs_row["refs_json"]) == 0
# grobid gets no additional POST from the above empty queries
assert len(responses.calls) == 1
@responses.activate
def test_grobid_refs_s104(grobid_client):
# test another file
with open("tests/files/crossref_api_work_s1047951103000064.json", "r") as f:
crossref_work = json.loads(f.read())
with open("tests/files/grobid_refs_s1047951103000064.tei.xml", "rb") as f:
responses.add(
responses.POST,
"http://dummy-grobid/api/processCitationList",
status=200,
body=f.read(),
content_type="application/xml; charset=UTF-8",
)
refs_row = grobid_client.crossref_refs(crossref_work)
# GROBID gets one more POST
assert len(responses.calls) == 1
assert refs_row["source"] == "crossref"
assert refs_row["source_id"] == "10.1017/s1047951103000064"
assert refs_row["source_ts"] == "2021-06-10T05:35:02Z"
refs = refs_row["refs_json"]
assert len(refs) == 24
assert set([r["id"] for r in refs]) == set(
[
"S1047951103000064_ref025",
"S1047951103000064_ref013",
"S1047951103000064_ref012",
"S1047951103000064_ref041",
"S1047951103000064_ref002",
"S1047951103000064_ref043",
"S1047951103000064_ref037",
"S1047951103000064_ref035",
"S1047951103000064_ref003",
"S1047951103000064_ref005",
"S1047951103000064_ref017",
"S1047951103000064_ref016",
"S1047951103000064_ref001",
"S1047951103000064_ref039",
"S1047951103000064_ref032",
"S1047951103000064_ref014",
"S1047951103000064_ref008",
"S1047951103000064_ref038",
"S1047951103000064_ref018",
"S1047951103000064_ref027",
"S1047951103000064_ref034",
"S1047951103000064_ref044",
"S1047951103000064_ref006",
"S1047951103000064_ref030",
]
)
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