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-rw-r--r--mapreduce/tests/test_extraction_cdx_grobid.py169
1 files changed, 169 insertions, 0 deletions
diff --git a/mapreduce/tests/test_extraction_cdx_grobid.py b/mapreduce/tests/test_extraction_cdx_grobid.py
new file mode 100644
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+++ b/mapreduce/tests/test_extraction_cdx_grobid.py
@@ -0,0 +1,169 @@
+
+import io
+import json
+import pytest
+import mrjob
+import responses
+import happybase_mock
+from extraction_cdx_grobid import MRExtractCDXGROBID
+
+
+
+def test_parse_cdx_line():
+
+ raw = "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf 20170828233154 https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf application/pdf 200 WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G - - 210251 931661233 SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz"
+ correct = {
+ 'key': "sha1:WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G",
+ 'file:mime': "application/pdf",
+ 'file:cdx': {
+ 'surt': "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
+ 'url': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
+ 'dt': "20170828233154",
+ 'warc': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz",
+ 'offset': 931661233,
+ 'c_size': 210251,
+ },
+ 'f:c': {
+ 'u': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
+ 'd': "2017-08-28T23:31:54",
+ 'f': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz",
+ 'o': 931661233,
+ 'c': 1,
+ }
+ }
+
+ assert transform_line(raw) == correct
+ assert transform_line(raw + "\n") == correct
+ assert transform_line(raw + " extra_field") == correct
+
+@pytest.fixture
+def job():
+ """
+ Note: this mock only seems to work with job.run_mapper(), not job.run();
+ the later results in a separate instantiation without the mock?
+ """
+ conn = happybase_mock.Connection()
+ conn.create_table('wbgrp-journal-extract-test',
+ {'file': {}, 'grobid0': {}, 'f': {}})
+ table = conn.table('wbgrp-journal-extract-test')
+
+ job = MRCDXBackfillHBase(['--no-conf', '-'], hb_table=table)
+ return job
+
+
+@responses.activate
+def test_mapper_lines(job):
+
+ fake_grobid = {}
+ responses.add(responses.POST, 'http://localhost:9070/api/processFulltextDocument', status=200,
+ body=json.dumps(fake_grobid), content_type='application/json')
+
+ raw = io.BytesIO(b"""
+com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 301 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
+eu,eui,cadmus)/bitstream/handle/1814/36635/rscas_2015_03.pdf;jsessionid=761393014319a39f40d32ae3eb3a853f?sequence=1 20170705062202 http://cadmus.eui.eu/bitstream/handle/1814/36635/RSCAS_2015_03.pdf%3Bjsessionid%3D761393014319A39F40D32AE3EB3A853F?sequence%3D1 application/PDF 200 MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J - - 854156 328850624 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
+com,pbworks,educ333b)/robots.txt 20170705063311 http://educ333b.pbworks.com/robots.txt text/plain 200 6VAUYENMOU2SK2OWNRPDD6WTQTECGZAD - - 638 398190140 CITESEERX-CRAWL-2017-06-20-20170705062707827-00049-00058-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705063158203-00053-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
+""")
+
+ job.sandbox(stdin=raw)
+ job.run_mapper()
+
+ # wayback gets FETCH 1x times
+
+ # grobid gets POST 3x times
+
+ # hbase
+
+
+ assert job.hb_table.row(b'1') == {}
+ # HTTP 301
+ assert job.hb_table.row(b'sha1:3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ') == {}
+ # valid
+ assert job.hb_table.row(b'sha1:MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J') != {}
+ # text/plain
+ assert job.hb_table.row(b'sha1:6VAUYENMOU2SK2OWNRPDD6WTQTECGZAD') == {}
+
+ row = job.hb_table.row(b'sha1:MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J')
+
+ assert struct.unpack("", row[b'file:size']) == 12345
+ assert row[b'file:mime'] == b"application/pdf"
+ assert struct.unpack("", row[b'grobid0:status_code']) == 200
+ assert row[b'grobid0:quality'] == None # TODO
+ status = json.loads(row[b'grobid0:status'].decode('utf-8'))
+ assert type(row[b'grobid0:status']) == type(dict())
+ assert row[b'grobid0:tei_xml'] == "<xml><lorem>ipsum</lorem></xml>"
+ tei_json = json.loads(row[b'grobid0:tei_json'].decode('utf-8'))
+ metadata = json.loads(row[b'grobid0:metadata'].decode('utf-8'))
+
+def test_parse_cdx_invalid(job):
+
+ print("valid")
+ raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
+ info, status = job.parse_line(raw)
+ assert status is None
+
+ print("space-prefixed line")
+ raw = io.BytesIO(b" com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
+ info, status = job.parse_line(raw)
+ assert info is None
+ assert status['status'] == "invalid"
+ assert 'prefix' in status['reason']
+
+ print("commented line")
+ raw = io.BytesIO(b"#com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
+ info, status = job.parse_line(raw)
+ assert info is None
+ assert status['status'] == "invalid"
+ assert 'prefix' in status['reason']
+
+ print("wrong column count")
+ raw = io.BytesIO(b"a b c d")
+ info, status = job.parse_line(raw)
+ assert info is None
+ assert status['status'] == "invalid"
+ assert 'parse' in status['reason']
+
+ print("missing mimetype")
+ raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
+ info, status = job.parse_line(raw)
+ assert info is None
+ assert status['status'] == "invalid"
+ assert 'parse' in status['reason']
+
+ print("HTTP status")
+ raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 501 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
+ info, status = job.parse_line(raw)
+ assert info is None
+ assert status['status'] == "invalid"
+
+ print("datetime")
+ raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 501 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
+ info, status = job.parse_line(raw)
+ assert info is None
+ assert status['status'] == "invalid"
+
+
+def test_parse_cdx_skip(job):
+
+ print("warc format")
+ raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
+ info, status = job.mapper(raw)
+ assert info is None
+ assert status['status'] == "skip"
+ assert 'WARC' in status['reason']
+
+ print("mimetype")
+ raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
+ info, status = job.mapper(raw)
+ assert info is None
+ assert status['status'] == "skip"
+ assert 'mimetype' in status['reason']
+
+def test_tei_json_convert():
+ # TODO: load xml test vector, run it through
+ with open('tests/files/23b29ea36382680716be08fc71aa81bd226e8a85.xml', 'r') as f:
+ xml_content = f.read()
+ pass
+
+def test_tei_json_convert_invalid():
+ # TODO: pass in junk
+ pass
generated by cgit v1.2.3 (git 2.39.1) at 2024-05-19 21:44:02 +0000