please: extract

This script needs refactoring!

1 files changed, 31 insertions, 0 deletions

diff --git a/please b/please
index 1ea751f..04aa709 100755
--- a/please
+++ b/please
@@ -13,6 +13,7 @@ from datetime import datetime
 
 HDFS_DIR = "hdfs:///user/bnewbold/sandcrawler"
 HBASE_HOST = "wbgrp-svc263.us.archive.org"
+GROBID_URI = "http://wbgrp-svc096.us.archive.org:8070"
 
 def rebuild_python():
     print("Rebuilding python venv...")
@@ -47,6 +48,31 @@ def run_backfill(args):
                 input_cdx=args.input_cdx)
     subprocess.call(cmd, shell=True)
 
+def run_extract(args):
+    if args.rebuild:
+        rebuild_python()
+    print("Starting extract job...")
+    output = "{}/output-{}/{}-extract".format(
+        HDFS_DIR,
+        args.env,
+        datetime.strftime(datetime.now(), "%Y-%m-%d-%H%M.%S"))
+    cmd = """cd mapreduce;
+        pipenv run ./extraction_cdx_grobid.py \
+            --hbase-host {hbase_host} \
+            --hbase-table wbgrp-journal-extract-0-{env} \
+            --grobid-uri {grobid_uri} \
+            -r hadoop \
+            -c mrjob.conf \
+            --archive venv-current.tar.gz#venv \
+            --jobconf mapred.line.input.format.linespermap=8000 \
+            --jobconf mapreduce.job.queuename=extraction \
+            --jobconf mapred.task.timeout=3600000 \
+            {input_cdx}
+            """.format(hbase_host=HBASE_HOST, env=args.env,
+                input_cdx=args.input_cdx,
+                grobid_uri=GROBID_URI)
+    subprocess.call(cmd, shell=True)
+
 def run_rowcount(args):
     print("Starting rowcount job...")
     output = "{}/output-{}/{}-rowcount".format(
@@ -80,6 +106,11 @@ def main():
     sub_backfill.add_argument('input_cdx',
         help="full HDFS path of CDX file to backfill")
 
+    sub_extract = subparsers.add_parser('extract')
+    sub_extract.set_defaults(func=run_extract)
+    sub_extract.add_argument('input_cdx',
+        help="full HDFS path of CDX file to extract")
+
     sub_rowcount = subparsers.add_parser('row-count')
     sub_rowcount.set_defaults(func=run_rowcount)