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authorBryan Newbold <bnewbold@archive.org>2018-04-03 16:30:19 -0700
committerBryan Newbold <bnewbold@archive.org>2018-04-03 16:30:19 -0700
commit5ea0ef0fd34f09fab51f51e2f1dbe5cf6ec137cc (patch)
tree6198a1c156d6922c02f12964d5e9a30d71677dcc /extraction
parentf10e8b798c8611d316279aa0afb158ee14691236 (diff)
downloadsandcrawler-5ea0ef0fd34f09fab51f51e2f1dbe5cf6ec137cc.tar.gz
sandcrawler-5ea0ef0fd34f09fab51f51e2f1dbe5cf6ec137cc.zip
WIP on extractor-with-mrjob
Diffstat (limited to 'extraction')
-rw-r--r--extraction/Pipfile25
-rw-r--r--extraction/Pipfile.lock858
-rw-r--r--extraction/README.md19
-rw-r--r--extraction/extraction.py52
4 files changed, 954 insertions, 0 deletions
diff --git a/extraction/Pipfile b/extraction/Pipfile
new file mode 100644
index 0000000..600916c
--- /dev/null
+++ b/extraction/Pipfile
@@ -0,0 +1,25 @@
+[[source]]
+name = "ia"
+url = "https://devpi.archive.org/wb/prod"
+verify_ssl = true
+
+[[source]]
+name = "pypi"
+url = "https://pypi.python.org/simple"
+verify_ssl = true
+
+[dev-packages]
+
+[packages]
+pytest = "*"
+mrjob = "*"
+requests = "*"
+wayback = {version=">=0.2.1.2", index="ia"}
+globalwayback = {version=">=0.3", index="ia"}
+pytest-pythonpath = "*"
+happybase = "*"
+happybase-mock = "*"
+xmltodict = "*"
+
+[requires]
+python_version = "3.5"
diff --git a/extraction/Pipfile.lock b/extraction/Pipfile.lock
new file mode 100644
index 0000000..329bea7
--- /dev/null
+++ b/extraction/Pipfile.lock
@@ -0,0 +1,858 @@
+{
+ "_meta": {
+ "hash": {
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+ },
+ "pipfile-spec": 6,
+ "requires": {
+ "python_version": "3.5"
+ },
+ "sources": [
+ {
+ "name": "ia",
+ "url": "https://devpi.archive.org/wb/prod",
+ "verify_ssl": true
+ },
+ {
+ "name": "pypi",
+ "url": "https://pypi.python.org/simple",
+ "verify_ssl": true
+ }
+ ]
+ },
+ "default": {
+ "attrs": {
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+ "version": "==17.4.0"
+ },
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+ "sha256:f93ddcdd6342f94cea379c73cddb5724e0d6d0a1c91c9bdef364dc0368ba4fda"
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+ "version": "==3.12"
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+ "sha256:8a1900a9f2a0a44ecf6e8b5eb3e967a9909dfed219ad66df094f27f7d6f330fb",
+ "sha256:a22ca993cea2962dbb588f9f30d0015ac4afcc45bee27d3978c0dbe9e97c6c0f"
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+ "sha256:9c443e7324ba5b85070c4a818ade28bfabedf16ea10206da1132edaa6dda237e"
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+ "sha256:d23aa14ae8145c13c95612d696736bad52a4bd0819ce8c9437ee745098fb8388"
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+ },
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+ "sha256:4ba5d6a48de9b73171df6c2c0378954fd08a2b55b7fecb9224dd48a87281efbe"
+ ],
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+ "version": "==0.1.2.1"
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+ "sha256:afe198a56ca86eb0e6e78e54ad1efaa16976163f153e6e45f6c44c1d280889db"
+ ],
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+ },
+ "wbex-client": {
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+ "sha256:447611c3df85175854c063ed784bb928f03262ad9a50fab2d74531c59200d94c"
+ ],
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+ },
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+ "sha256:d5da73735293558eb1651ee2fddc4d0dedcfa06538b8813a2e20011583c9e49b"
+ ],
+ "version": "==0.14.1"
+ },
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+ "sha256:8f8d7d40aa28d83f4109a7e8aa86e67a4df202d9538be40c0cb1d70da527b0df",
+ "sha256:add07d92089ff611badec526912747cf87afd4f9447af6661aca074eeaf32615"
+ ],
+ "index": "ia",
+ "version": "==0.11.0"
+ }
+ },
+ "develop": {}
+}
diff --git a/extraction/README.md b/extraction/README.md
new file mode 100644
index 0000000..1da1454
--- /dev/null
+++ b/extraction/README.md
@@ -0,0 +1,19 @@
+
+
+## Development and Testing
+
+Requires (eg, via `apt`):
+
+- libjpeg-dev
+
+Install pipenv system-wide if you don't have it:
+
+ # or use apt, homebrew, etc
+ sudo pip3 install pipenv
+
+Run the tests with:
+
+ pipenv run pytest
+
+TODO: GROBID and HBase during development?
+
diff --git a/extraction/extraction.py b/extraction/extraction.py
new file mode 100644
index 0000000..cdca433
--- /dev/null
+++ b/extraction/extraction.py
@@ -0,0 +1,52 @@
+#!/usr/bin/env python3
+
+import io
+import sys
+import requests
+#import happybase
+import mrjob
+from mrjob.job import MRJob
+from wayback.resource import Resource
+from wayback.resource import ArcResource
+from wayback.resourcestore import ResourceStore
+from gwb.loader import CDXLoaderFactory
+
+
+def process_pdf_using_grobid(content_buffer, debug_line):
+ """Query GrobId server & process response
+ """
+ GROBID_SERVER="http://wbgrp-svc096.us.archive.org:8070"
+ content = content_buffer.read()
+ r = requests.post(GROBID_SERVER + "/api/processFulltextDocument",
+ files={'input': content})
+ if r.status_code is not 200:
+ print("FAIL (Grobid: {}): {}".format(r.content.decode('utf8'), debug_line))
+ else:
+ print("SUCCESS: " + debug_line)
+
+class Cdx_Record_Pipeline(object):
+
+ def read_cdx_and_parse(self, parser_func, accepted_mimes = []):
+ """Read in CDX lines and process PDF records fetched over HTTP
+ """
+ rstore = ResourceStore(loaderfactory=CDXLoaderFactory())
+ for line in sys.stdin:
+ line = line.rstrip()
+ cdx_line = line.split()
+ #ignoring NLine offset
+ if len(cdx_line) != 12:
+ continue
+ cdx_line = cdx_line[1:]
+ (src_url, timestamp, mime, record_location, record_offset, record_length) = (cdx_line[2], cdx_line[1], cdx_line[3], cdx_line[-1], cdx_line[-2], cdx_line[-3])
+ if '-' == record_length or not record_location.endswith('arc.gz') or mime not in accepted_mimes:
+ continue
+ orig_url = cdx_line[2]
+ debug_line = ' '.join(cdx_line)
+ try:
+ record_location = 'http://archive.org/download/' + record_location
+ record_offset = int(record_offset)
+ record_length = int(record_length)
+ resource_data = rstore.load_resource(record_location, record_offset, record_length)
+ parser_func(resource_data.open_raw_content(), debug_line)
+ except:
+ continue