diff options
author | Martin Czygan <martin.czygan@gmail.com> | 2021-05-27 16:13:47 +0200 |
---|---|---|
committer | Martin Czygan <martin.czygan@gmail.com> | 2021-05-27 16:13:47 +0200 |
commit | eb9d9205a2d8b83bdcb50b63e98b5c90fbb94c6c (patch) | |
tree | a916b334a2156fa7def353f5edb40345a4b46acf /python | |
parent | 647c570a813767d237e379ae35779f79e8e79198 (diff) | |
download | refcat-eb9d9205a2d8b83bdcb50b63e98b5c90fbb94c6c.tar.gz refcat-eb9d9205a2d8b83bdcb50b63e98b5c90fbb94c6c.zip |
tasks: convert ref to release schema
Diffstat (limited to 'python')
-rw-r--r-- | python/refcat/tasks.py | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index a67e430..a471b1e 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -803,6 +803,7 @@ class UnmatchedMapped(Refcat): def run(self): output = shellout(""" zstdcat -T0 {input} | + skate-conf -f ref | skate-map -m cns -skip-on-empty 1 | LC_ALL=C sort -T {tmpdir} -S25% -k1,1 --parallel 4 | zstd -T0 -c > {output} |