From eb9d9205a2d8b83bdcb50b63e98b5c90fbb94c6c Mon Sep 17 00:00:00 2001 From: Martin Czygan Date: Thu, 27 May 2021 16:13:47 +0200 Subject: tasks: convert ref to release schema --- python/refcat/tasks.py | 1 + 1 file changed, 1 insertion(+) (limited to 'python') diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index a67e430..a471b1e 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -803,6 +803,7 @@ class UnmatchedMapped(Refcat): def run(self): output = shellout(""" zstdcat -T0 {input} | + skate-conf -f ref | skate-map -m cns -skip-on-empty 1 | LC_ALL=C sort -T {tmpdir} -S25% -k1,1 --parallel 4 | zstd -T0 -c > {output} -- cgit v1.2.3