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| author | Martin Czygan <martin.czygan@gmail.com> | 2021-05-27 16:21:48 +0200 |
|---|---|---|
| committer | Martin Czygan <martin.czygan@gmail.com> | 2021-05-27 16:21:48 +0200 |
| commit | 56390b40ce4d5a7e4d0f17a935cf6a9c3d950be6 (patch) | |
| tree | e2b73a1e787804cbbb74072e0a2faa175873cce1 /python | |
| parent | fbd0f0ea35824ab69a51e2407d2c235be860d131 (diff) | |
| download | refcat-56390b40ce4d5a7e4d0f17a935cf6a9c3d950be6.tar.gz refcat-56390b40ce4d5a7e4d0f17a935cf6a9c3d950be6.zip | |
fix typo
Diffstat (limited to 'python')
| -rw-r--r-- | python/refcat/tasks.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index a471b1e..807b6fd 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -803,7 +803,7 @@ class UnmatchedMapped(Refcat): def run(self): output = shellout(""" zstdcat -T0 {input} | - skate-conf -f ref | + skate-conv -f ref | skate-map -m cns -skip-on-empty 1 | LC_ALL=C sort -T {tmpdir} -S25% -k1,1 --parallel 4 | zstd -T0 -c > {output} |