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| author | Martin Czygan <martin.czygan@gmail.com> | 2021-05-24 22:15:29 +0200 |
|---|---|---|
| committer | Martin Czygan <martin.czygan@gmail.com> | 2021-05-24 22:15:29 +0200 |
| commit | 1f031bed6e0014bfe1f16eadd9be08f02a99ede4 (patch) | |
| tree | c8cf1efb226fda470fefee6a21f7d51c56e56ffe /python | |
| parent | 5cf00fd3d87cec3d08bca085318bd38e411e6272 (diff) | |
| download | refcat-1f031bed6e0014bfe1f16eadd9be08f02a99ede4.tar.gz refcat-1f031bed6e0014bfe1f16eadd9be08f02a99ede4.zip | |
tasks: use cns mapper
Diffstat (limited to 'python')
| -rw-r--r-- | python/refcat/tasks.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index 8b29f94..cf23a55 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -760,7 +760,7 @@ class UnmatchedMapped(Refcat): def run(self): output = shellout(""" zstdcat -T0 {input} | - skate-map -m cts | + skate-map -m cns | LC_ALL=C sort -T {tmpdir} -S25% -k1,1 --parallel 4 | zstd -T0 -c > {output} """, |