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authorMartin Czygan <martin.czygan@gmail.com>2021-08-08 15:18:29 +0200
committerMartin Czygan <martin.czygan@gmail.com>2021-08-08 15:18:29 +0200
commitbd66b58cded2c2c7e7b7e5d374434d6531dd70de (patch)
tree00417812b9787ab4492e2c590fcf1bf6f4b576e7 /docs/Simple
parentbb64b3aa62267676302e75f0ca44157b514beec4 (diff)
downloadrefcat-bd66b58cded2c2c7e7b7e5d374434d6531dd70de.tar.gz
refcat-bd66b58cded2c2c7e7b7e5d374434d6531dd70de.zip
docs: cleanup and naming
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-*.log
-*.aux
-*.bbl
-*.blg
-*.out
diff --git a/docs/Simple/LICENSE b/docs/Simple/LICENSE
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--- a/docs/Simple/LICENSE
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-MIT License
-
-Copyright (c) 2017 Ruoho Ruotsi
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
diff --git a/docs/Simple/Makefile b/docs/Simple/Makefile
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-main.pdf: main.tex
- latexindent -w main.tex && rm -f main.bak*
- pdflatex main.tex
- bibtex main
- pdflatex main.tex
- pdflatex main.tex
-
-
-.PHONY: clean
-clean:
- rm -f main.pdf
- rm -f main.aux
- rm -f main.log
- rm -f main.bbl
- rm -f main.blg
- rm -f main.out
-
diff --git a/docs/Simple/README.md b/docs/Simple/README.md
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-# latex-template-arxiv-preprint
-A simple LaTeX template for Technical Reports, arXiv preprints &amp; 2-column Conference papers
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-\documentclass[hidelinks,10pt,twocolumn]{article}
-\usepackage{simpleConference}
-\usepackage[utf8]{inputenc}
-\usepackage{times}
-\usepackage{graphicx}
-\usepackage{natbib}
-\usepackage{doi}
-\usepackage{amssymb}
-\usepackage{url,hyperref}
-\usepackage{booktabs} % professional-quality tables
-\usepackage{amsfonts} % blackboard math symbols
-\usepackage{nicefrac} % compact symbols for 1/2, etc.
-\usepackage{caption}
-
-\usepackage{datetime}
-\providecommand{\keywords}[1]{\textbf{\textit{Index terms---}} #1}
-\setlength{\parindent}{0pt}
-
-\begin{document}
-
-\title{Fatcat Reference Dataset}
-
-\author{Martin Czygan \\
- \\
- Internet Archive \\
- San Francisco, California, USA \\
- martin@archive.org \\
- \and
- Bryan Newbold \\
- \\
- Internet Archive \\
- San Francisco, California, USA \\
- bnewbold@archive.org \\
- \\
-}
-
-
-\maketitle
-\thispagestyle{empty}
-
-
-\begin{abstract}
- As part of its scholarly data efforts, the Internet Archive releases a first version of a citation
- graph dataset, named \emph{refcat}, derived from scholarly publications and
- additional data sources. It is composed of data gathered by the fatcat
- cataloging project\footnote{\url{https://fatcat.wiki}}, related web-scale
- crawls targeting primary and secondary scholarly outputs, as well as metadata
- from the Open Library\footnote{\url{https://openlibrary.org}} project and
- Wikipedia\footnote{\url{https://wikipedia.org}}. This first version of the
- graph consists of 1,323,423,672 citations. We release this dataset under a CC0
- Public Domain Dedication, accessible through an archive
- item\footnote{\url{https://archive.org/details/refcat_2021-07-28}}. All
- code used in the derivation process is released under an MIT
- license\footnote{\url{https://gitlab.com/internetarchive/cgraph}}.
-\end{abstract}
-
-\keywords{Citation Graph, Web Archiving}
-
-\section{Introduction}
-
-
-The Internet Archive releases a first version of a citation graph dataset
-derived from a raw corpus of about 2.5B references gathered from metadata and
-data obtained by PDF extraction tools such as
-GROBID\cite{lopez2009grobid}. Additionally, we consider integration with
-metadata from Open Library and Wikipedia.
-The goal of this report is to describe briefly the current contents and the
-derivation of the dataset. We expect
-this dataset to be iterated upon, with changes both in content and processing.
-
-Modern citation indexes can be traced back to the early computing age, when
-projects like the Science Citation Index (1955)\citep{garfield2007evolution}
-were first devised, living on in existing commercial knowledge bases today.
-Open alternatives were started such as the Open Citations Corpus (OCC) in 2010
-- the first version of which contained 6,325,178 individual
-references\citep{shotton2013publishing}. Other notable early projects
-include CiteSeerX\citep{wu2019citeseerx} and CitEc\citep{CitEc}. The last
-decade has seen the emergence of more openly available, large scale
-citation projects like Microsoft Academic\citep{sinha2015overview} or the
-Initiative for Open Citations\citep{i4oc}\citep{shotton2018funders}. In 2021,
-according to \citep{hutchins2021tipping} over 1B citations are publicly
-available, marking a tipping point for this category of data.
-
-\section{Related Work}
-
-There are a few large scale citation dataset available today. COCI, the
-``OpenCitations Index of Crossref open DOI-to-DOI citations'' was first
-released 2018-07-29. As of its most recent release\footnote{\url{https://opencitations.net/download}}, on
-2021-07-29, it contains
-1,094,394,688 citations across 65,835,422 bibliographic
-resources\citep{peroni2020opencitations}.
-
-The WikiCite\footnote{\url{https://meta.wikimedia.org/wiki/WikiCite}} project,
-``a Wikimedia initiative to develop open citations and linked bibliographic
-data to serve free knowledge'' continously adds citations to its database and
-as of 2021-06-28 tracks 253,719,394 citations across 39,994,937
-publications\footnote{\url{http://wikicite.org/statistics.html}}.
-
-Microsoft Academic Graph\citep{sinha2015overview} is comprised of a number of
-entities\footnote{\url{https://docs.microsoft.com/en-us/academic-services/graph/reference-data-schema}}
-with \emph{PaperReferences} being one relation among many others. As of 2021-06-07\footnote{A recent copy has been preserved at
- \url{https://archive.org/details/mag-2021-06-07}} the
-\emph{PaperReferences} relation contains 1,832,226,781 rows (edges) across 123,923,466
-bibliographic entities.
-
-Numerous other projects have been or are concerned with various aspects of
-citation discovery and curation as part their feature set, among them Semantic
-Scholar\citep{fricke2018semantic}, CiteSeerX\citep{li2006citeseerx} or Aminer\citep{tang2016aminer}.
-
-As mentioned in \citep{hutchins2021tipping}, the number of openly available
-citations is not expected to shrink in the future.
-
-
-\section{Dataset}
-
-We release the first version of the \emph{refcat} dataset in an format used
-internally for storage and to serve queries (and which we call \emph{biblioref}
-or \emph{bref} for short). The dataset includes metadata from fatcat, the
-Open Library Project and inbound links from the English Wikipedia. The fatcat
-project itself aggregates data from variety of open data sources, such as
-Crossref\citep{crossref}, PubMed\citep{canese2013pubmed},
-DataCite\citep{brase2009datacite}, DOAJ\citep{doaj}, dblp\citep{ley2002dblp} and others,
-as well as metadata generated from analysis of data preserved at the Internet
-Archive and active crawls of publication sites on the web.
-
-The dataset is
-integrated into the \href{https://fatcat.wiki}{fatcat website} and allows users
-to explore inbound and outbound references\cite{fatcatguidereferencegraph}.
-
-The format records source and target (fatcat release and work) identifiers, a
-few attributes from the metadata (such as year or release stage) as well as
-information about the match status and provanance.
-
-The dataset currently contains 1,323,423,672 citations across 76,327,662
-entities (55,123,635 unique source and 60,244,206 unique target work
-identifiers; for 1,303,424,212 - or 98.49\% of all citations - we do have a DOI
-for both source and target).
-The majority of matches - 1,250,523,321 - are established through identifier
-based matching (DOI, PMIC, PMCID, ARXIV, ISBN). 72,900,351 citations are
-established through fuzzy matching techniques.
-
-The majority of citations between \emph{refcat} and COCI overlap, as can be
-seen in~Table~\ref{table:cocicmp}.
-
-\begin{table}[]
- \begin{center}
- \begin{tabular}{ll}
- \toprule
- \bf{Set} & \bf{Count} \\
-
- \midrule
- COCI (C) & 1,094,394,688 \\
- \emph{refcat-doi} (R) & 1,303,424,212 \\ % zstdcat -T0 /magna/refcat/2021-07-28/BrefDOITable/date-2021-07-28.tsv.zst | pv -l | LC_ALL=C sort -T /sandcrawler-db/tmp-refcat/ -S70% -k3,4 -u | zstd -c -T0 > uniq_34.tsv.zst
- C $\cap$ R & 1,007,539,966 \\
- C $\setminus$ R & 86,854,309 \\
- R $\setminus$ C & 295,884,246
- \end{tabular}
- \vspace*{2mm}
- \caption{Comparison between COCI and \emph{refcat-doi}, a subset of
- \emph{refcat} where entities have a known DOI. At least 50\% of the
- 295,884,246 references only in \emph{refcat-doi} come from links
- recorded within a specific dataset provider (GBIF, DOI prefix:
- 10.15468).}
- \label{table:cocicmp}
- \end{center}
-\end{table}
-
-% zstdcat -T0 /magna/refcat/2021-07-28/BrefDOITable/date-2021-07-28.tsv.zst | pv -l | LC_ALL=C sort -T /sandcrawler-db/tmp-refcat/ -S70% -k3,4 -u | zstd -c -T0 > uniq_34.tsv.zst
-% zstdcat -T0 uniq_34.tsv.zst | pv -l | LC_ALL=C cut -f3,4 | zstd -c -T0 > uniq_34_doi.tsv.zst
-% find . -name "*.csv" | parallel -j 16 "LC_ALL=C grep -v ^oci, {} | LC_ALL=C cut -d, -f2,3" | pv -l | zstd -c -T0 > ../6741422v10_doi_only.csv.zst
-
-
-\section{System Design}
-
-The constraints for the systems design are informed by the volume and the
-variety of the data. The capability to run the whole graph derivation on a
-single machine was a minor goal as well. In total, the raw inputs amount to a
-few terabytes of textual content, mostly newline delimited JSON. More
-importantly, while the number of data fields is low, certain schemas are very
-partial with hundreds of different combinations of available field values found
-in the raw reference data. This is most likely caused by aggregators passing on
-reference data coming from hundreds of sources, each of which not necessarily
-agreeing on a common granularity for citation data and from artifacts of
-machine learning based structured data extraction tools.
-
-Each combination of fields may require a slightly different processing path.
-For example, references with an Arxiv identifier can be processed differently
-from references with only a title. Over 50\% of the raw reference data comes
-from a set of eight field set manifestations, as listed in
-Table~\ref{table:fields}.
-
-\begin{table}[]
- \begin{center}
- \begin{tabular}{ll}
- \toprule
- \bf{Fields} & \bf{Percentage} \\
- \midrule
- \multicolumn{1}{l}{CN $\cdot$ RN $\cdot$ P $\cdot$ T $\cdot$ U $\cdot$ V $\cdot$ Y} & 14\% \\
- \multicolumn{1}{l}{\textbf{DOI}} & 14\% \\
- \multicolumn{1}{l}{CN $\cdot$ CRN $\cdot$ IS $\cdot$ P $\cdot$ T $\cdot$ U $\cdot$ V $\cdot$ Y} & 5\% \\
- \multicolumn{1}{l}{CN $\cdot$ CRN $\cdot$ \textbf{DOI} $\cdot$ U $\cdot$ V $\cdot$ Y} & 4\% \\
- \multicolumn{1}{l}{\textbf{PMID} $\cdot$ U} & 4\% \\
- \multicolumn{1}{l}{CN $\cdot$ CRN $\cdot$ \textbf{DOI} $\cdot$ T $\cdot$ V $\cdot$ Y} & 4\% \\
- \multicolumn{1}{l}{CN $\cdot$ CRN $\cdot$ Y} & 4\% \\
- \multicolumn{1}{l}{CN $\cdot$ CRN $\cdot$ \textbf{DOI} $\cdot$ V $\cdot$ Y} & 4\% \\
- \end{tabular}
- \vspace*{2mm}
- \caption{Top 8 combinations of available fields in raw reference data
- accounting for about 53\% of the total data (CN = container name, CRN =
- contrib raw name, P = pages, T = title, U = unstructured, V = volume, IS =
- issue, Y = year, DOI = doi, PMID = pmid). Unstructured fields may contain any value. Identifiers emphasized.}
- \label{table:fields}
- \end{center}
-\end{table}
-
-Overall, a map-reduce style\citep{dean2010mapreduce} approach is
-followed\footnote{While the operations are similar, the processing is not
- distributed but runs on a single machine. For space efficiency, zstd\citep{collet2018zstandard} is used to compress raw data and derivations.}, which allows
-for some
-uniformity in the overall processing. We extract (key, document) tuples (as
-TSV) from the raw JSON data and sort by key. We then group documents with the
-same key and apply a function on each group in order to generate
-our target schema or perform
-additional operations such as deduplication or fusion of matched and unmatched references.
-
-The key derivation can be exact (via an identifier like DOI, PMID, etc) or
-based on a value normalization, like slugifying a title string. For identifier
-based matches we can generate the target schema directly. For fuzzy matching
-candidates, we pass possible match pairs through a verification procedure,
-which is implemented for \emph{release entity}\footnote{\url{https://guide.fatcat.wiki/entity_release.html}.} pairs. This procedure is a
-domain dependent rule based verification, able to identify different versions
-of a publication, preprint-published pairs and documents, which are
-are similar by various metrics calculated over title and author fields. The fuzzy matching
-approach is applied on all reference documents without identifier (a title is
-currently required).
-
-With a few schema conversions, fuzzy matching can be applied to Wikipedia
-articles and Open Library (edition) records as well. The aspect of precision
-and recall are represented by the two stages: we are generous in the match
-candidate generation phase in order to improve recall, but we are strict during
-verification, in order to control precision. Quality assurance for verification is
-implemented through a growing list of test cases of real examples from the catalog and
-their expected or desired match status\footnote{The list can be found under:
- \url{https://gitlab.com/internetarchive/cgraph/-/blob/master/skate/testdata/verify.csv}.
- It is helpful to keep this test suite independent of any specific programming language.}.
-
-
-\section{Limitations and Future Work}
-
-As other dataset in this field we expect this dataset to be iterated upon.
-
-\begin{itemize}
- \item The fatcat catalog updates its metadata
- continously\footnote{A changelog can currenly be followed here:
- \url{https://fatcat.wiki/changelog}} and web crawls are conducted
- regularly. Current processing pipelines cover raw reference snapshot
- creation and derivation of the graph structure, which allows to rerun
- processing based on updated data as it becomes available.
-
- \item Metadata extraction from PDFs depends on supervised machine learning
- models, which in turn depend on available training datasets. With additional crawls and
- metadata available we hope to improve models used for metadata
- extraction, improving yield and reducing data extraction artifacts in
- the process.
-
- \item As of this version, a number of raw reference
- docs remain unmatched, which means that neither exact nor fuzzy matching
- has detected a link to a known entity. On the one
- hand, this can hint at missing metadata. However, parts of the data
- will contain a reference to a catalogued entity, but in a specific,
- dense and harder to recover form.
- This also include improvements to the fuzzy matching approach.
- \item The reference dataset contains millions of URLs and their integration
- into the graph has been implemented as prototype. A full implementation
- requires a few data cleanup and normalization steps.
-\end{itemize}
-
-\section{Acknowledgements}
-
-This work is partially supported by a grant from the \emph{Andrew W. Mellon
- Foundation}.
-
-
-\section{Appendix A}
-
-
-A note on data quality: While we implement various data quality measures,
-real-world data, especially coming from many different sources will contain
-issues. Among other measures, we keep track of match reasons,
-especially for fuzzy matching to be able to zoom in on systematic errors
-more easily (see~Table~\ref{table:matches}).
-
-\begin{table}[]
- \footnotesize
- \captionsetup{font=normalsize}
- \begin{center}
- \begin{tabular}{@{}rlll@{}}
- \toprule
- \textbf{Count} & \textbf{Provenance} & \textbf{Status} & \textbf{Reason} \\ \midrule
- 934932865 & crossref & exact & doi \\
- 151366108 & fatcat-datacite & exact & doi \\
- 65345275 & fatcat-pubmed & exact & pmid \\
- 48778607 & fuzzy & strong & jaccardauthors \\
- 42465250 & grobid & exact & doi \\
- 29197902 & fatcat-pubmed & exact & doi \\
- 19996327 & fatcat-crossref & exact & doi \\
- 11996694 & fuzzy & strong & slugtitleauthormatch \\
- 9157498 & fuzzy & strong & tokenizedauthors \\
- 3547594 & grobid & exact & arxiv \\
- 2310025 & fuzzy & exact & titleauthormatch \\
- 1496515 & grobid & exact & pmid \\
- 680722 & crossref & strong & jaccardauthors \\
- 476331 & fuzzy & strong & versioneddoi \\
- 449271 & grobid & exact & isbn \\
- 230645 & fatcat-crossref & strong & jaccardauthors \\
- 190578 & grobid & strong & jaccardauthors \\
- 156657 & crossref & exact & isbn \\
- 123681 & fatcat-pubmed & strong & jaccardauthors \\
- 79328 & crossref & exact & arxiv \\
- 57414 & crossref & strong & tokenizedauthors \\
- 53480 & fuzzy & strong & pmiddoipair \\
- 52453 & fuzzy & strong & dataciterelatedid \\
- 47119 & grobid & strong & slugtitleauthormatch \\
- 36774 & fuzzy & strong & arxivversion \\
- % 35311 & fuzzy & strong & customieeearxiv \\
- % 33863 & grobid & exact & pmcid \\
- % 23504 & crossref & strong & slugtitleauthormatch \\
- % 22753 & fatcat-crossref & strong & tokenizedauthors \\
- % 17720 & grobid & exact & titleauthormatch \\
- % 14656 & crossref & exact & titleauthormatch \\
- % 14438 & grobid & strong & tokenizedauthors \\
- % 7682 & fatcat-crossref & exact & arxiv \\
- % 5972 & fatcat-crossref & exact & isbn \\
- % 5525 & fatcat-pubmed & exact & arxiv \\
- % 4290 & fatcat-pubmed & strong & tokenizedauthors \\
- % 2745 & fatcat-pubmed & exact & isbn \\
- % 2342 & fatcat-pubmed & strong & slugtitleauthormatch \\
- % 2273 & fatcat-crossref & strong & slugtitleauthormatch \\
- % 1960 & fuzzy & exact & workid \\
- % 1150 & fatcat-crossref & exact & titleauthormatch \\
- % 1041 & fatcat-pubmed & exact & titleauthormatch \\
- % 895 & fuzzy & strong & figshareversion \\
- % 317 & fuzzy & strong & titleartifact \\
- % 82 & grobid & strong & titleartifact \\
- % 33 & crossref & strong & titleartifact \\
- % 5 & fuzzy & strong & custombsiundated \\
- % 1 & fuzzy & strong & custombsisubdoc \\
- % 1 & fatcat & exact & doi \\ \bottomrule
- \end{tabular}
- \vspace*{2mm}
- \caption{Table of match counts (top 25), reference provenance, match status and
- match reason. The match reason identifier encode a specific rule in the domain
- dependent verification process and are included for completeness - we do not
- include the details of each rule in this report.}
- \label{table:matches}
- \end{center}
-\end{table}
-
-\bibliographystyle{abbrv}
-% \bibliographystyle{plainnat}
-\bibliography{refs}
-\end{document}
diff --git a/docs/Simple/refs.bib b/docs/Simple/refs.bib
deleted file mode 100644
index c61021e..0000000
--- a/docs/Simple/refs.bib
+++ /dev/null
@@ -1,228 +0,0 @@
-@inproceedings{kour2014real,
- title={Real-time segmentation of on-line handwritten arabic script},
- author={Kour, George and Saabne, Raid},
- booktitle={Frontiers in Handwriting Recognition (ICFHR), 2014 14th International Conference on},
- pages={417--422},
- year={2014},
- organization={IEEE}
-}
-
-@inproceedings{kour2014fast,
- title={Fast classification of handwritten on-line Arabic characters},
- author={Kour, George and Saabne, Raid},
- booktitle={Soft Computing and Pattern Recognition (SoCPaR), 2014 6th International Conference of},
- pages={312--318},
- year={2014},
- organization={IEEE},
- doi={10.1109/SOCPAR.2014.7008025}
-}
-
-@article{hadash2018estimate,
- title={Estimate and Replace: A Novel Approach to Integrating Deep Neural Networks with Existing Applications},
- author={Hadash, Guy and Kermany, Einat and Carmeli, Boaz and Lavi, Ofer and Kour, George and Jacovi, Alon},
- journal={arXiv preprint arXiv:1804.09028},
- year={2018}
-}
-
-@article{garfield1955citation,
- title={Citation indexes for science},
- author={Garfield, Eugene},
- journal={Science},
- volume={122},
- number={3159},
- pages={108--111},
- year={1955},
- publisher={JSTOR}
-}
-
-@inproceedings{lopez2009grobid,
- title={GROBID: Combining automatic bibliographic data recognition and term extraction for scholarship publications},
- author={Lopez, Patrice},
- booktitle={International conference on theory and practice of digital libraries},
- pages={473--474},
- year={2009},
- organization={Springer}
-}
-
-@article{garfield2007evolution,
- title={The evolution of the science citation index},
- author={Garfield, Eugene},
- journal={International microbiology},
- volume={10},
- number={1},
- pages={65},
- year={2007}
-}
-
-@article{shotton2013publishing,
- title={Publishing: open citations},
- author={Shotton, David},
- journal={Nature News},
- volume={502},
- number={7471},
- pages={295},
- year={2013}
-}
-
-@misc{CitEc,
- title = {Citations in Economics},
- howpublished = {\url{https://citec.repec.org/}},
- note = {Accessed: 2021-07-30}
-}
-
-@inproceedings{wu2019citeseerx,
- title={CiteSeerX: 20 years of service to scholarly big data},
- author={Wu, Jian and Kim, Kunho and Giles, C Lee},
- booktitle={Proceedings of the Conference on Artificial Intelligence for Data Discovery and Reuse},
- pages={1--4},
- year={2019}
-}
-
-@inproceedings{li2006citeseerx,
- title={CiteSeerx: an architecture and web service design for an academic document search engine},
- author={Li, Huajing and Councill, Isaac and Lee, Wang-Chien and Giles, C Lee},
- booktitle={Proceedings of the 15th international conference on World Wide Web},
- pages={883--884},
- year={2006}
-}
-
-
-@inproceedings{sinha2015overview,
- title={An overview of microsoft academic service (mas) and applications},
- author={Sinha, Arnab and Shen, Zhihong and Song, Yang and Ma, Hao and Eide, Darrin and Hsu, Bo-June and Wang, Kuansan},
- booktitle={Proceedings of the 24th international conference on world wide web},
- pages={243--246},
- year={2015}
-}
-
-@misc{i4oc,
- title = {Initiative for Open Citations},
-howpublished = {\url{https://i4oc.org/}},
-note = {Accessed: 2021-07-30}
-}
-
-@misc{fatcatguidereferencegraph,
-title = {The Fatcat Guide: Reference Graph (refcat)},
-howpublished = {\url{https://guide.fatcat.wiki/reference_graph.html}},
-note = {Accessed: 2021-08-08}
-}
-
-@misc{crossref,
-title = {Crossref},
-howpublished = {\url{https://crossref.org}},
-note = {Accessed: 2021-08-08}
-}
-
-@misc{doaj,
-title = {Directory of Open Access Journals},
-howpublished = {\url{https://doaj.org}},
-note = {Accessed: 2021-08-08}
-}
-
-@inproceedings{ley2002dblp,
- title={The DBLP computer science bibliography: Evolution, research issues, perspectives},
- author={Ley, Michael},
- booktitle={International symposium on string processing and information retrieval},
- pages={1--10},
- year={2002},
- organization={Springer}
-}
-
-
-@inproceedings{brase2009datacite,
- title={DataCite-A global registration agency for research data},
- author={Brase, Jan},
- booktitle={2009 fourth international conference on cooperation and promotion of information resources in science and technology},
- pages={257--261},
- year={2009},
- organization={IEEE}
-}
-
-@article{canese2013pubmed,
- title={PubMed: the bibliographic database},
- author={Canese, Kathi and Weis, Sarah},
- journal={The NCBI Handbook},
- volume={2},
- pages={1},
- year={2013},
- publisher={National Center for Biotechnology Information (US)}
-}
-
-
-@article{shotton2018funders,
- title={Funders should mandate open citations.},
- author={Shotton, David},
- journal={Nature},
- volume={553},
- number={7686},
- pages={129--130},
- year={2018},
- publisher={Nature Publishing Group}
-}
-
-@article{hutchins2021tipping,
- title={A tipping point for open citation data},
- author={Hutchins, B Ian},
- journal={Quantitative Science Studies},
- pages={1--5},
- year={2021}
-}
-
-@article{silbert1970world,
- title={The World's First Computerized Criminal-Justice Information-Sharing System-The New York State Identification and Intelligence System (NYSIIS)},
- author={Silbert, Jeffrey M},
- journal={Criminology},
- volume={8},
- pages={107},
- year={1970},
- publisher={HeinOnline}
-}
-
-@article{peroni2020opencitations,
- title={OpenCitations, an infrastructure organization for open scholarship},
- author={Peroni, Silvio and Shotton, David},
- journal={Quantitative Science Studies},
- volume={1},
- number={1},
- pages={428--444},
- year={2020},
- publisher={MIT Press One Rogers Street, Cambridge, MA 02142-1209, USA journals-info~…}
-}
-
-@article{fricke2018semantic,
- title={Semantic scholar},
- author={Fricke, Suzanne},
- journal={Journal of the Medical Library Association: JMLA},
- volume={106},
- number={1},
- pages={145},
- year={2018},
- publisher={Medical Library Association}
-}
-
-@inproceedings{tang2016aminer,
- title={AMiner: Toward understanding big scholar data},
- author={Tang, Jie},
- booktitle={Proceedings of the ninth ACM international conference on web search and data mining},
- pages={467--467},
- year={2016}
-}
-
-@article{dean2010mapreduce,
- title={MapReduce: a flexible data processing tool},
- author={Dean, Jeffrey and Ghemawat, Sanjay},
- journal={Communications of the ACM},
- volume={53},
- number={1},
- pages={72--77},
- year={2010},
- publisher={ACM New York, NY, USA}
-}
-
-@article{collet2018zstandard,
- title={Zstandard Compression and the application/zstd Media Type},
- author={Collet, Yann and Kucherawy, Murray},
- journal={RFC 8478},
- year={2018}
-}
-
diff --git a/docs/Simple/simpleConference.sty b/docs/Simple/simpleConference.sty
deleted file mode 100644
index d4d4764..0000000
--- a/docs/Simple/simpleConference.sty
+++ /dev/null
@@ -1,136 +0,0 @@
-% ---------------------------------------------------------------
-% Style file for simple, two column conference papers.
-% Based on latex8.sty by Paolo.Ienne@di.epfl.ch
-% ---------------------------------------------------------------
-% Use with LaTeX2e as:
-% \documentclass[times,10pt,twocolumn]{article}
-% \usepackage{simpleConference}
-% \usepackage{times}
-% ---------------------------------------------------------------
-% specify references as
-% \bibliographystyle{simpleConference}
-% \bibliography{...your files...}
-%
-% use Section{} and SubSection{} instead of standard section{}
-% and subsection{} to obtain headings in the form
-% "1.3. My heading"
-% ---------------------------------------------------------------
-% ten point helvetica bold required for captions
-% in some sites the name of the helvetica bold font may differ,
-% change the name here:
-\font\tenhv = phvb at 10pt
-
-% eleven point times bold required for second-order headings
-\font\elvbf = ptmb scaled 1100
-
-% set dimensions of columns, gap between columns, and paragraph indent
-\setlength{\textheight}{8.875in}
-\setlength{\textwidth}{6.875in}
-\setlength{\columnsep}{0.3125in}
-\setlength{\topmargin}{0in}
-\setlength{\headheight}{0in}
-\setlength{\headsep}{0in}
-\setlength{\parindent}{1pc}
-\setlength{\oddsidemargin}{-.304in}
-\setlength{\evensidemargin}{-.304in}
-
-% memento from size10.clo
-% \normalsize{\@setfontsize\normalsize\@xpt\@xiipt}
-% \small{\@setfontsize\small\@ixpt{11}}
-% \footnotesize{\@setfontsize\footnotesize\@viiipt{9.5}}
-% \scriptsize{\@setfontsize\scriptsize\@viipt\@viiipt}
-% \tiny{\@setfontsize\tiny\@vpt\@vipt}
-% \large{\@setfontsize\large\@xiipt{14}}
-% \Large{\@setfontsize\Large\@xivpt{18}}
-% \LARGE{\@setfontsize\LARGE\@xviipt{22}}
-% \huge{\@setfontsize\huge\@xxpt{25}}
-% \Huge{\@setfontsize\Huge\@xxvpt{30}}
-
-\def\@maketitle
- {
- \newpage
- \null
- \vskip .375in
- \begin{center}
- {\Large \bf \@title \par}
- % additional two empty lines at the end of the title
- \vspace*{24pt}
- {
- \large
- \lineskip .5em
- \begin{tabular}[t]{c}
- \@author
- \end{tabular}
- \par
- }
- % additional small space at the end of the author name
- \vskip .5em
- {
- \large
- \begin{tabular}[t]{c}
- \@affiliation
- \end{tabular}
- \par
- \ifx \@empty \@email
- \else
- \begin{tabular}{r@{~}l}
- E-mail: & {\tt \@email}
- \end{tabular}
- \par
- \fi
- }
- % additional empty line at the end of the title block
- \vspace*{12pt}
- \end{center}
- }
-
-\def\abstract
- {%
- \centerline{\large\bf Abstract}%
- \vspace*{12pt}%
-% \it% %%%% iroro - commenting out italicized abstract
- }
-
-\def\endabstract
- {
- % additional empty line at the end of the abstract
- \vspace*{12pt}
- }
-
-\def\affiliation#1{\gdef\@affiliation{#1}} \gdef\@affiliation{}
-
-\def\email#1{\gdef\@email{#1}}
-\gdef\@email{}
-
-\newlength{\@ctmp}
-\newlength{\@figindent}
-\setlength{\@figindent}{1pc}
-
-\long\def\@makecaption#1#2{
- \vskip 10pt
- \setbox\@tempboxa\hbox{\tenhv\noindent #1.~#2}
- \setlength{\@ctmp}{\hsize}
- \addtolength{\@ctmp}{-\@figindent}\addtolength{\@ctmp}{-\@figindent}
- % IF longer than one indented paragraph line
- \ifdim \wd\@tempboxa >\@ctmp
- % THEN set as an indented paragraph
- \begin{list}{}{\leftmargin\@figindent \rightmargin\leftmargin}
- \item[]\tenhv #1.~#2\par
- \end{list}
- \else
- % ELSE center
- \hbox to\hsize{\hfil\box\@tempboxa\hfil}
- \fi}
-
-% correct heading spacing and type
-\def\section{\@startsection {section}{1}{\z@}
- {14pt plus 2pt minus 2pt}{14pt plus 2pt minus 2pt} {\large\bf}}
-\def\subsection{\@startsection {subsection}{2}{\z@}
- {13pt plus 2pt minus 2pt}{13pt plus 2pt minus 2pt} {\elvbf}}
-
-% add the period after section numbers
-\newcommand{\Section}[1]{\section{\hskip -1em.~#1}}
-\newcommand{\SubSection}[1]{\subsection{\hskip -1em.~#1}}
-
-% end of file latex8.sty
-% ---------------------------------------------------------------