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authorBryan Newbold <bnewbold@robocracy.org>2021-11-03 13:57:18 -0700
committerBryan Newbold <bnewbold@robocracy.org>2021-11-03 16:46:07 -0700
commit5d29d1336afc90d3575a0379a9e9d9bdac8d1856 (patch)
treec22755cdf2615453ab1f3b7ddaf13becd946a63d /python/fatcat_tools/importers/pubmed.py
parentcaf1cb316ed18820f3239a285ef14bf45ef963a2 (diff)
downloadfatcat-5d29d1336afc90d3575a0379a9e9d9bdac8d1856.tar.gz
fatcat-5d29d1336afc90d3575a0379a9e9d9bdac8d1856.zip
typing: relatively simple type check fixes
These mostly add new variable names so that existing variables aren't overwritten with a new type; delay coercing '{}' or '[]' to 'None' until the last minute; adding is-not-None checks to conditional clauses; and similar small changes.
Diffstat (limited to 'python/fatcat_tools/importers/pubmed.py')
-rw-r--r--python/fatcat_tools/importers/pubmed.py24
1 files changed, 7 insertions, 17 deletions
diff --git a/python/fatcat_tools/importers/pubmed.py b/python/fatcat_tools/importers/pubmed.py
index 41268925..d32fcefa 100644
--- a/python/fatcat_tools/importers/pubmed.py
+++ b/python/fatcat_tools/importers/pubmed.py
@@ -495,12 +495,12 @@ class PubmedImporter(EntityImporter):
release_year = int(pub_date.Year.string)
if pub_date.find("Day") and pub_date.find("Month"):
try:
- release_date = datetime.date(
+ release_date_date = datetime.date(
release_year,
MONTH_ABBR_MAP[pub_date.Month.string],
int(pub_date.Day.string),
)
- release_date = release_date.isoformat()
+ release_date = release_date_date.isoformat()
except ValueError as ve:
print("bad date, skipping: {}".format(ve), file=sys.stderr)
release_date = None
@@ -595,8 +595,6 @@ class PubmedImporter(EntityImporter):
)
if abst.content:
abstracts.append(abst)
- if not abstracts:
- abstracts = None
### Contribs
contribs = []
@@ -663,8 +661,6 @@ class PubmedImporter(EntityImporter):
for i, contrib in enumerate(contribs):
if contrib.raw_name != "et al.":
contrib.index = i
- if not contribs:
- contribs = None
### References
refs = []
@@ -692,16 +688,12 @@ class PubmedImporter(EntityImporter):
ref_raw = ref.Citation
if ref_raw:
ref_extra["unstructured"] = ref_raw.get_text()
- if not ref_extra:
- ref_extra = None
refs.append(
fatcat_openapi_client.ReleaseRef(
target_release_id=ref_release_id,
- extra=ref_extra,
+ extra=ref_extra or None,
)
)
- if not refs:
- refs = None
# extra:
# translation_of
@@ -711,8 +703,6 @@ class PubmedImporter(EntityImporter):
# pubmed: retraction refs
if extra_pubmed:
extra["pubmed"] = extra_pubmed
- if not extra:
- extra = None
title = clean(title)
if not title:
@@ -739,11 +729,11 @@ class PubmedImporter(EntityImporter):
# publisher # not included?
language=language,
# license_slug # not in MEDLINE
- abstracts=abstracts,
- contribs=contribs,
- refs=refs,
+ abstracts=abstracts or None,
+ contribs=contribs or None,
+ refs=refs or None,
container_id=container_id,
- extra=extra,
+ extra=extra or None,
)
return re