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* | handle grobid2json errors in calling code instead | Bryan Newbold | 2020-01-02 | 1 | -1/+7 | |
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* | db: move duplicate row filtering into DB insert helpers | Bryan Newbold | 2020-01-02 | 2 | -15/+26 | |
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* | remove unused filter in grobid worker | Bryan Newbold | 2020-01-02 | 1 | -1/+0 | |
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* | fix dict typo | Bryan Newbold | 2020-01-02 | 1 | -1/+1 | |
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* | improvements to grobid persist worker | Bryan Newbold | 2020-01-02 | 1 | -13/+16 | |
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* | small (syntax?) changes to pig join script | Bryan Newbold | 2020-01-02 | 1 | -2/+2 | |
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* | update persist worker invocation to use batches | Bryan Newbold | 2020-01-02 | 1 | -15/+55 | |
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* | set mimetype when PUT to minio | Bryan Newbold | 2020-01-02 | 1 | -0/+4 | |
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* | fix DB import counting | Bryan Newbold | 2020-01-02 | 1 | -4/+5 | |
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* | include an example environment file | Bryan Newbold | 2020-01-02 | 1 | -0/+2 | |
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* | teixml2json test update for skipping null JSON keys | Bryan Newbold | 2020-01-02 | 1 | -10/+1 | |
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* | fix small errors found by pylint | Bryan Newbold | 2020-01-02 | 2 | -1/+2 | |
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* | fix sandcrawler persist workers | Bryan Newbold | 2020-01-02 | 2 | -8/+37 | |
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* | filter ingest results to not have key conflicts within batch | Bryan Newbold | 2020-01-02 | 1 | -1/+16 | |
| | | | | | This handles a corner case with ON CONFLICT ... DO UPDATE where you can't do multiple such updates in the same batch transaction. | |||||
* | db: fancy insert/update separation using postgres xmax | Bryan Newbold | 2020-01-02 | 2 | -24/+45 | |
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* | add PersistGrobidDiskWorker | Bryan Newbold | 2020-01-02 | 2 | -0/+60 | |
| | | | | To help with making dumps directly from Kafka (eg, for partner delivery) | |||||
* | flush out minio helper, add to grobid persist | Bryan Newbold | 2020-01-02 | 3 | -24/+91 | |
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* | update minio README | Bryan Newbold | 2020-01-02 | 1 | -10/+42 | |
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* | implement counts properly for persist workers | Bryan Newbold | 2020-01-02 | 1 | -15/+19 | |
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* | improve DB helpers | Bryan Newbold | 2020-01-02 | 1 | -26/+81 | |
| | | | | | - return insert/update row counts - implement ON CONFLICT ... DO UPDATE on some tables | |||||
* | be more parsimonious with GROBID metadata | Bryan Newbold | 2020-01-02 | 2 | -3/+20 | |
| | | | | | Because these are getting persisted in database (as well as kafka), don't write out empty keys. | |||||
* | start work on DB connector and minio client | Bryan Newbold | 2020-01-02 | 2 | -0/+200 | |
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* | have JsonLinePusher continue on JSON decode errors (but count) | Bryan Newbold | 2020-01-02 | 1 | -1/+5 | |
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* | start work on persist workers and tool | Bryan Newbold | 2020-01-02 | 3 | -5/+336 | |
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* | yet more tweaks to ingest proposal | Bryan Newbold | 2020-01-02 | 1 | -3/+2 | |
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* | SQL docs update for diesel change | Bryan Newbold | 2020-01-02 | 2 | -0/+48 | |
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* | move SQL schema to diesel migration pattern | Bryan Newbold | 2020-01-02 | 5 | -70/+157 | |
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* | hadoop job log rename and update | Bryan Newbold | 2019-12-27 | 1 | -0/+25 | |
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* | update job log with pig runs | Bryan Newbold | 2019-12-26 | 1 | -0/+10 | |
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* | update TODO | Bryan Newbold | 2019-12-26 | 1 | -1/+7 | |
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* | kafka topics: compress api-datacite | Bryan Newbold | 2019-12-24 | 1 | -1/+1 | |
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* | basic arabesque2ingestrequest script | Bryan Newbold | 2019-12-24 | 1 | -0/+69 | |
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* | commit grobid_tool transform mode | Bryan Newbold | 2019-12-22 | 1 | -0/+27 | |
| | | | | Had some stale code on aitio with this change I forgot to commit. Oops! | |||||
* | pig: first rev of join-cdx-sha1 script | Bryan Newbold | 2019-12-22 | 3 | -0/+91 | |
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* | pig: move count_lines helper to pighelper.py | Bryan Newbold | 2019-12-22 | 3 | -7/+6 | |
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* | refactor: use print(..., file=sys.stderr) | Bryan Newbold | 2019-12-18 | 5 | -32/+34 | |
| | | | | Should use logging soon, but this seems more idiomatic in the meanwhile. | |||||
* | refactor: sort keys in JSON output | Bryan Newbold | 2019-12-18 | 4 | -6/+7 | |
| | | | | This makes debugging by tailing Kafka topics a lot more readable | |||||
* | refactor: improve argparse usage | Bryan Newbold | 2019-12-18 | 5 | -13/+27 | |
| | | | | | use ArgumentDefaultsHelpFormatter and add help messages to all sub-commands | |||||
* | update ingest proposal source/link naming | Bryan Newbold | 2019-12-13 | 2 | -17/+27 | |
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* | sql schema change proposals | Bryan Newbold | 2019-12-11 | 1 | -0/+40 | |
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* | pdftotext proposal | Bryan Newbold | 2019-12-11 | 1 | -0/+123 | |
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* | add some GROBID metadata schema docs to SQL schema | Bryan Newbold | 2019-12-11 | 1 | -0/+11 | |
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* | update ingest proposal | Bryan Newbold | 2019-12-11 | 1 | -11/+145 | |
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* | fixes for large GROBID result skip | Bryan Newbold | 2019-12-02 | 1 | -2/+2 | |
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* | count empty blobs as 'failed' instead of crashing | Bryan Newbold | 2019-12-01 | 1 | -1/+2 | |
| | | | | Might be better to record an artificial kafka response instead? | |||||
* | cleanup unused import | Bryan Newbold | 2019-12-01 | 1 | -1/+0 | |
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* | filter out very large GROBID XML bodies | Bryan Newbold | 2019-12-01 | 1 | -0/+6 | |
| | | | | | | | | | | This is to prevent Kafka MSG_SIZE_TOO_LARGE publish errors. We should probably bump this in the future. Open problems: hand-coding this size number isn't good, need to update in two places. Shouldn't filter out for non-Kafka sinks. Might still exist a corner-case where JSON encoded XML is larger than XML character string, due to encoding (eg, for unicode characters). | |||||
* | updated re-GROBID job log entry | Bryan Newbold | 2019-11-15 | 1 | -0/+31 | |
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* | CI: make some jobs manual | Bryan Newbold | 2019-11-15 | 2 | -6/+12 | |
| | | | | | Scalding test is broken :( But we aren't even using that code much these days. | |||||
* | handle wayback fetch redirect loop in ingest code | Bryan Newbold | 2019-11-14 | 1 | -2/+5 | |
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