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authorEllen Spertus <ellen.spertus@gmail.com>2018-06-03 16:31:59 -0700
committerEllen Spertus <ellen.spertus@gmail.com>2018-06-03 16:31:59 -0700
commit5da6d85175992fae019e1d4d1ebeb4accfec1820 (patch)
tree0aa2ab2d74e23fdfce365b36b21c75338624582f
parent59c2827bcd682a6c78714438ef8d7aaca2ccf13b (diff)
downloadsandcrawler-5da6d85175992fae019e1d4d1ebeb4accfec1820.tar.gz
sandcrawler-5da6d85175992fae019e1d4d1ebeb4accfec1820.zip
Added HBaseBuilder.parseColSpecs and tests, which pass.
-rw-r--r--scalding/src/main/scala/sandcrawler/HBaseBuilder.scala49
-rw-r--r--scalding/src/test/scala/sandcrawler/HBaseBuilderTest.scala43
2 files changed, 92 insertions, 0 deletions
diff --git a/scalding/src/main/scala/sandcrawler/HBaseBuilder.scala b/scalding/src/main/scala/sandcrawler/HBaseBuilder.scala
new file mode 100644
index 0000000..c55aef6
--- /dev/null
+++ b/scalding/src/main/scala/sandcrawler/HBaseBuilder.scala
@@ -0,0 +1,49 @@
+package sandcrawler
+
+import cascading.tuple.Fields
+import parallelai.spyglass.hbase.HBaseConstants.SourceMode
+import parallelai.spyglass.hbase.HBaseSource
+import scala._
+
+object HBaseBuilder {
+ // map from column families to column names
+ val schema = Map("f" -> List("c"),
+ "file" -> List("size", "mime", "cdx"),
+ "grobid0" -> List("status_code", "quality", "status", "tei_xml", "tei_json", "metadata"),
+ "match0" -> List("status", "doi", "info"))
+ // map from colFamily:colName -> colFamily
+ // Code from https://stackoverflow.com/a/50595189/6310511
+ val inverseSchema = for ((k, vs) <- schema; v <- vs) yield (k + ":" + v, k)
+
+ @throws(classOf[IllegalArgumentException])
+ def parseColSpec(colSpecs: List[String]) : (List[String], List[Fields]) = {
+ // Verify that all column specifiers are legal.
+ for (colSpec <- colSpecs) {
+ if (!(inverseSchema contains colSpec)) {
+ throw new IllegalArgumentException("No such column: " + colSpec)
+ }
+ val pair = colSpec split(":")
+ if (colSpec.split(":").length != 2) {
+ throw new IllegalArgumentException("Bad column specifier " + colSpec +
+ " (specifiers should be family:name)")
+ }
+ }
+
+ // Produce and return a tuple containing:
+ // 1. A list of column families.
+ // 2. A corresponding list of Fields, each containing column names.
+ val groupMap: Map[String, List[String]] = colSpecs.groupBy(c => (c split ":")(0))
+ val families = groupMap.keys.toList
+ val groupedColNames : List[List[String]] = families map {fam => {
+ val cols = {groupMap(fam).map(v => v.split(":")(1))}
+ cols}}
+ (families, groupedColNames.map({fields => new Fields(fields : _*)}))
+ }
+
+ /*
+ def build(table: String, server: String, colSpec: List[String], sourceMode: SourceMode, keyList: List[String]) {
+ val (families: List[String], fields: List[Fields]) = parseColSpec(colSpec)
+ new HBaseSource(table, server, new Fields("key"), families, fields, sourceMode = sourceMode, keyList = keyList)
+ }
+ */
+}
diff --git a/scalding/src/test/scala/sandcrawler/HBaseBuilderTest.scala b/scalding/src/test/scala/sandcrawler/HBaseBuilderTest.scala
new file mode 100644
index 0000000..b45751d
--- /dev/null
+++ b/scalding/src/test/scala/sandcrawler/HBaseBuilderTest.scala
@@ -0,0 +1,43 @@
+package example
+
+import cascading.tuple.Fields
+import org.scalatest._
+import sandcrawler.HBaseBuilder
+
+class HBaseBuilderTest extends FlatSpec with Matchers {
+ "parseColSpec()" should "work on legal nontrivial input" in {
+ val (fams, fields) = HBaseBuilder.parseColSpec(List("file:size", "file:cdx", "match0:status"))
+ fams should have length 2
+ fields should have length 2
+ val fileIndex = fams.indexOf("file")
+ fileIndex should not be -1
+ fields(fileIndex) should be (new Fields("size", "cdx"))
+ val match0Index = fams.indexOf("match0")
+ match0Index should not be -1
+ fields(match0Index) should be (new Fields("status"))
+ }
+
+ it should "work on empty input" in {
+ val (fams, fields) = HBaseBuilder.parseColSpec(List())
+ fams should have length 0
+ fields should have length 0
+ }
+
+ it should "throw IllegalArgumentException on malformed input" in {
+ a [IllegalArgumentException] should be thrownBy {
+ HBaseBuilder.parseColSpec(List("file_size"))
+ }
+ }
+
+ it should "throw IllegalArgumentException on nonexistent family" in {
+ a [IllegalArgumentException] should be thrownBy {
+ HBaseBuilder.parseColSpec(List("foo:bar"))
+ }
+ }
+
+ it should "throw IllegalArgumentException on nonexistent column" in {
+ a [IllegalArgumentException] should be thrownBy {
+ HBaseBuilder.parseColSpec(List("file:bar"))
+ }
+ }
+}