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// This file contains various "reducers", e.g. working on two data streams and
// applying a function on groups of documents with a shared key.
//
// Note: This is a bit repetitive, but not want to introduce any other
// abstraction for now. Since most of the logic is in the grouper functions, we
// could make them top level and then assemble the zipkey runner on the fly.
//
// The most confusing aspect currently is the variety of schemas hidden within
// the readers (and string groups): release, ref, ref-as-release, open library,
// wikipedia, ...
package skate
import (
"fmt"
"io"
"log"
"strings"
"git.archive.org/martin/cgraph/skate/zipkey"
json "github.com/segmentio/encoding/json"
)
// groupLogf logs a message alongsize a serialized group for debugging.
func groupLogf(g *zipkey.Group, s string, vs ...interface{}) {
log.Printf(s, vs...)
b, _ := json.MarshalIndent(g, "", " ")
log.Println(string(b))
}
// ZippyExact takes a release and refs reader (key, doc) and assigns a fixed
// match result.
func ZippyExact(releases, refs io.Reader, matchResult MatchResult, w io.Writer) error {
var (
enc = json.NewEncoder(w)
keyer = makeKeyFunc("\t", 1)
i = 0
grouper = func(g *zipkey.Group) error {
i++
if i%10000 == 0 {
log.Printf("processed %v groups", i)
}
var (
target *Release
ref *Ref
err error
)
if len(g.G0) == 0 || len(g.G1) == 0 {
return nil
}
if target, err = stringToRelease(Cut(g.G0[0], 2)); err != nil {
groupLogf(g, "[skip] failed to parse release: %v", err)
return nil
}
for _, line := range g.G1 {
if ref, err = stringToRef(Cut(line, 2)); err != nil {
groupLogf(g, "[skip] failed to parse ref: %v", err)
continue
}
var bref BiblioRef
bref.SourceReleaseIdent = ref.ReleaseIdent
bref.SourceWorkIdent = ref.WorkIdent
bref.SourceReleaseStage = ref.ReleaseStage
bref.SourceYear = fmt.Sprintf("%d", ref.ReleaseYear)
bref.RefIndex = ref.Index + 1 // we want 1-index (also helps with omitempty)
bref.RefKey = ref.Key
bref.TargetReleaseIdent = target.Ident
bref.TargetWorkIdent = target.WorkID
bref.MatchProvenance = ref.RefSource
bref.MatchStatus = matchResult.Status.Short()
bref.MatchReason = matchResult.Reason.Short()
if err := enc.Encode(bref); err != nil {
return err
}
}
return nil
}
)
zipper := zipkey.New(releases, refs, keyer, grouper)
return zipper.Run()
}
// ZippyExactReleases takes two release readers (key, doc) and assigns a fixed
// match result.
func ZippyExactReleases(olReader, reReader io.Reader, matchResult MatchResult, w io.Writer) error {
var (
enc = json.NewEncoder(w)
keyer = makeKeyFunc("\t", 1)
i = 0
grouper = func(g *zipkey.Group) error {
i++
if i%10000 == 0 {
log.Printf("processed %v groups", i)
}
var (
target, re *Release
err error
)
if len(g.G0) == 0 || len(g.G1) == 0 {
return nil
}
if target, err = stringToRelease(Cut(g.G0[0], 2)); err != nil {
groupLogf(g, "[skip] failed to parse release: %v", err)
return nil
}
for _, line := range g.G1 {
if re, err = stringToRelease(Cut(line, 2)); err != nil {
groupLogf(g, "[skip] failed to parse release: %v", err)
continue
}
if target.WorkID == "" {
continue
}
var bref BiblioRef
bref.SourceReleaseIdent = re.Ident
bref.SourceWorkIdent = re.WorkID
bref.SourceReleaseStage = re.ReleaseStage
bref.SourceYear = fmt.Sprintf("%d", re.ReleaseYear())
bref.RefIndex = re.Extra.Skate.Ref.Index + 1 // we want 1-index (also helps with omitempty)
bref.RefKey = re.Extra.Skate.Ref.Key
bref.TargetOpenLibraryWork = target.WorkID
bref.MatchProvenance = re.Extra.Skate.Ref.Source
bref.MatchStatus = matchResult.Status.Short()
bref.MatchReason = matchResult.Reason.Short()
if err := enc.Encode(bref); err != nil {
return err
}
}
return nil
}
)
zipper := zipkey.New(olReader, reReader, keyer, grouper)
return zipper.Run()
}
// ZippyExactWiki takes a release and wiki reader (key, doc) and assigns a
// fixed match result.
func ZippyExactWiki(releases, wiki io.Reader, mr MatchResult, w io.Writer) error {
var (
enc = json.NewEncoder(w)
keyer = makeKeyFunc("\t", 1)
grouper = func(g *zipkey.Group) error {
var (
target *Release
wiki *MinimalCitations
err error
)
if len(g.G0) == 0 || len(g.G1) == 0 {
return nil
}
if target, err = stringToRelease(Cut(g.G0[0], 2)); err != nil {
return err
}
for _, line := range g.G1 {
if wiki, err = stringToWiki(Cut(line, 2)); err != nil {
return err
}
var bref BiblioRef
bref.Key = fmt.Sprintf("%s_%s", slugifyString(wiki.PageTitle), target.Ident) // XXX: what should we use?
bref.SourceWikipediaArticle = wiki.PageTitle
bref.TargetReleaseIdent = target.Ident
bref.TargetWorkIdent = target.WorkID
bref.MatchProvenance = "wikipedia"
bref.MatchStatus = mr.Status.Short()
bref.MatchReason = mr.Reason.Short()
if err := enc.Encode(bref); err != nil {
return err
}
}
return nil
}
)
zipper := zipkey.New(releases, wiki, keyer, grouper)
return zipper.Run()
}
// ZippyVerifyRefs takes a release and refs reader (key, doc), run fuzzy
// verification and will emit a biblioref document, if exact or strong match.
func ZippyVerifyRefs(releases, refs io.Reader, w io.Writer) error {
var (
enc = json.NewEncoder(w)
keyer = makeKeyFunc("\t", 1)
grouper = func(g *zipkey.Group) error {
var (
re, pivot *Release
err error
)
if len(g.G0) == 0 || len(g.G1) == 0 {
return nil
}
if pivot, err = stringToRelease(Cut(g.G0[0], 2)); err != nil {
return err
}
for _, line := range g.G1 {
if re, err = stringToRelease(Cut(line, 2)); err != nil {
return err
}
result := Verify(pivot, re)
switch result.Status {
case StatusExact, StatusStrong:
if result.Reason == ReasonDOI {
continue
}
br := generateBiblioRef(re, pivot, result, "fuzzy")
if err := enc.Encode(br); err != nil {
return err
}
default:
// XXX: We want to add unmatched pieces as well; here? We
// probably want to do a single final pass to complete the
// dataset.
}
}
return nil
}
)
zipper := zipkey.New(releases, refs, keyer, grouper)
return zipper.Run()
}
// ZippyVerifyRefsOpenLibraryTable takes OL editions (as release) and refs (as
// release) and emits a match table for manual inspection.
func ZippyVerifyRefsOpenLibraryTable(olr, refs io.Reader, w io.Writer) error {
var (
keyer = makeKeyFunc("\t", 1)
grouper = func(g *zipkey.Group) error {
var (
re, pivot *Release
err error
)
if len(g.G0) == 0 || len(g.G1) == 0 {
return nil
}
// We take a single edition from OL.
if pivot, err = stringToRelease(Cut(g.G0[0], 2)); err != nil {
return err
}
for _, line := range g.G1 {
if re, err = stringToRelease(Cut(line, 2)); err != nil {
return err
}
// The refs have a container name, but not a title, but here we
// compare against titles from open library.
re.Title = re.ContainerName
result := Verify(pivot, re)
fmt.Printf("%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n",
result.Status.Short(),
result.Reason.Short(),
pivot.Extra.OpenLibrary.WorkID,
FindByPrefix(pivot.Extra.OpenLibrary.SourceRecords, "ia:"),
re.Ident,
CutSep(g.G0[0], "\t", 1),
pivot.Title,
re.Title)
}
return nil
}
)
zipper := zipkey.New(olr, refs, keyer, grouper)
return zipper.Run()
}
// ZippyVerifyRefsOpenLibrary takes OL editions (as release) and refs (as
// release) and emits a match table for manual inspection.
func ZippyVerifyRefsOpenLibrary(olr, refs io.Reader, w io.Writer) error {
var (
enc = json.NewEncoder(w)
keyer = makeKeyFunc("\t", 1)
grouper = func(g *zipkey.Group) error {
var (
ref, pivot *Release // ref (reference), pivot (open library)
err error
)
if len(g.G0) == 0 || len(g.G1) == 0 {
return nil
}
// We take a single edition from OL.
if pivot, err = stringToRelease(Cut(g.G0[0], 2)); err != nil {
return err
}
for _, line := range g.G1 {
if ref, err = stringToRelease(Cut(line, 2)); err != nil {
return err
}
// The refs have a container name, but not a title, but here we
// compare against titles from open library.
ref.Title = ref.ContainerName
result := Verify(pivot, ref)
switch result.Status {
case StatusExact, StatusStrong:
var bref BiblioRef
bref.SourceReleaseIdent = ref.Ident
bref.SourceWorkIdent = ref.WorkID
bref.SourceReleaseStage = ref.ReleaseStage
bref.SourceYear = fmt.Sprintf("%d", ref.ReleaseYear())
bref.RefIndex = ref.Extra.Skate.Ref.Index + 1 // we want 1-index (also helps with omitempty)
bref.RefKey = ref.Extra.Skate.Ref.Key
bref.TargetOpenLibraryWork = pivot.WorkID
bref.MatchProvenance = ref.Extra.Skate.Ref.Source
bref.MatchStatus = result.Status.Short()
bref.MatchReason = result.Reason.Short()
if err := enc.Encode(bref); err != nil {
return err
}
default:
}
}
return nil
}
)
zipper := zipkey.New(olr, refs, keyer, grouper)
return zipper.Run()
}
// ZippyBrefAugment takes all matched elements from bref and adds docs from raw
// refs, which have not been matched. It also gets rid of duplicate matches.
//
// We can identify, which docs have been matched by checking the ref key and index.
func ZippyBrefAugment(bref, raw io.Reader, w io.Writer) error {
return nil
}
// Cut returns a specific column (1-indexed, like CutSep) from a tabular
// file, returns empty string if column is invalid.
func Cut(line string, column int) string {
return CutSep(line, "\t", column)
}
// CutSep allows to specify a separator.
func CutSep(line, sep string, column int) string {
parts := strings.Split(strings.TrimSpace(line), sep)
if len(parts) < column {
return ""
} else {
return parts[column-1]
}
}
// FindByPrefix return the first element for a slice of strings, which matches a prefix.
func FindByPrefix(ss []string, prefix string) string {
for _, s := range ss {
if strings.HasPrefix(s, prefix) {
return s
}
}
return ""
}
// makeKeyFunc creates a function that can be used as keyFunc, selecting a
// column from fields separated by sep; column is 1-indexed.
func makeKeyFunc(sep string, column int) func(string) (string, error) {
return func(s string) (string, error) {
if k := CutSep(s, sep, column); k == "" {
return k, fmt.Errorf("cannot get key from column %d in line (len=%d): %s", column, len(s), s)
} else {
return k, nil
}
}
}
func stringToRelease(s string) (r *Release, err error) {
err = json.Unmarshal([]byte(s), &r)
return
}
func stringToRef(s string) (r *Ref, err error) {
err = json.Unmarshal([]byte(s), &r)
return
}
func stringToWiki(s string) (r *MinimalCitations, err error) {
err = json.Unmarshal([]byte(s), &r)
return
}
|