path: root/skate/map.go

package skate

import (
	"bytes"
	"errors"
	"reflect"
	"regexp"
	"runtime"
	"strings"

	"github.com/segmentio/encoding/json"
	"github.com/tidwall/gjson"
	"golang.org/x/text/unicode/norm"
)

var (
	bTab     = []byte("\t")
	bNewline = []byte("\n")

	ErrZeroFields       = errors.New("zero fields")
	ErrMissingFieldName = errors.New("missing field name")

	wsReplacer = strings.NewReplacer("\t", " ", "\n", " ")
	repeatedWs = regexp.MustCompile(`[ ]{2,}`)
	nonWord    = regexp.MustCompile(`[\W]+`)

	SandcrawlerCharMap = map[string]string{
		"\u00c6": "AE",
		"\u00e6": "ae",
		"\u00d0": "D",
		"\u00f0": "d",
		"\u00d8": "O",
		"\u00f8": "o",
		"\u00de": "Th",
		"\u00fe": "th",
		"\u00df": "s",
		"\u0110": "D",
		"\u0111": "d",
		"\u0126": "H",
		"\u0127": "h",
		"\u0131": "i",
		"\u0138": "k",
		"\u0141": "L",
		"\u0142": "l",
		"\u014a": "N",
		"\u014b": "n",
		"\u0152": "Oe",
		"\u0153": "oe",
		"\u0166": "T",
		"\u0167": "t",
		"\u00b5": "u",
		"c":      "c",
		"\u0192": "f",
		"\u2202": "",
		"\u0296": "",
		"\u2211": "",
		"\u220f": "",
		"\u02c6": "",
		"\u2603": "",
		"\u02c7": "",
	}
	SandcrawlerPrefixRemove = []string{
		"original article: ", "original article ", "article: ", "title: ",
	}
	// SandcrawlerPrefixRemove does not have:
	// InCombiningDiacriticalMarks (assume it's in "M"),
	// https://unicodebook.readthedocs.io/unicode.html,
	// https://stackoverflow.com/q/5697171/89391,
	// https://github.com/google/re2/wiki/Syntax.
	SandcrawlerRemoveCharRegex = regexp.MustCompile("[\\s\\p{P}\\p{M}\u2000-\u206F\u2E00-\u2E7F’\u0060·“”‘’“”«»「」¿–±§_°ʖ©®¤=<>|+$^~≈√∫≤≥÷ƒ∆¬£¢∞¥◊€]")
)

// TitleDoc is a document with a title.
type TitleDoc struct {
	Title string `json:"title"`
}

// ContainerNameDoc is a (ref) document with a container title.
type ContainerNameDoc struct {
	Biblio struct {
		ContainerName string `json:"container_name"`
	} `json:"biblio"`
}

// PartialRef for ref docs, that do not have DOI or title. E.g. we found 49701699
// (NCVY), 36401044 (NCVYU), 29668363 (NCUY), and so on. Some examples: XXX.
type PartialRef struct {
	ContainerName string `json:"container_name"`
	Contribs      []struct {
		// XXX: Need a way to sensibly compare sets of author names.
		RawName string `json:"raw_name"`
	} `json:"contribs"`
	Volume       string `json:"volume"`
	Unstructured string `json:"unstructured"`
	Year         string `json:"release_year"`
}

// cdxSummary is an ad-hoc CDX summary format, created currently by skate-cdx-lookup.
type cdxSummary struct {
	Line    string `json:"line"`
	NumRows int64  `json:"numRows"`
	Summary struct {
		Delta int64  `json:"delta"`
		Last  string `json:"last"`
		Ok    string `json:"ok"`
	} `json:"summary"`
}

// Mapper maps a blob to an arbitrary number of fields, e.g. for (key,
// doc). We want fields, but we do not want to bake in TSV into each function.
type Mapper func([]byte) ([][]byte, error)

// AsTSV serializes the result of a field mapper as TSV. This is a slim
// adapter, e.g. to parallel.Processor, which expects this function signature.
// A newline will be appended, if not there already.
//
// Anecdotally a parallelized implementation of a mapper can process around 300MiB/s.
func (f Mapper) AsTSV(p []byte) ([]byte, error) {
	var (
		fields [][]byte
		err    error
		b      []byte
	)
	if fields, err = f(p); err != nil {
		return nil, err
	}
	if len(fields) == 0 {
		return nil, nil
	}
	b = bytes.Join(fields, bTab)
	if len(b) > 0 && !bytes.HasSuffix(b, bNewline) {
		b = append(b, bNewline...)
	}
	return b, nil
}

// WithPrefix is a "mapper middleware", adding a given prefix to the first field.
func WithPrefix(f Mapper, prefix string) Mapper {
	return func(p []byte) ([][]byte, error) {
		fields, err := f(p)
		if err != nil {
			return fields, err
		}
		if len(fields) == 0 {
			return nil, ErrZeroFields
		}
		fields[0] = append([]byte(prefix+":"), fields[0]...)
		return fields, err
	}
}

// WithBestEffort will not fail on an error.
func WithBestEffort(f Mapper) Mapper {
	return func(p []byte) ([][]byte, error) {
		if fields, err := f(p); err != nil {
			return nil, nil
		} else {
			return fields, err
		}
	}
}

// WithSkipOnEmpty ignores results where the value at a given field is empty.
// One indexed.
func WithSkipOnEmpty(f Mapper, index int) Mapper {
	return func(p []byte) ([][]byte, error) {
		fields, err := f(p)
		if err != nil {
			return nil, err
		}
		if index < len(fields) && len(fields[index]) == 0 {
			return nil, nil
		}
		return fields, err
	}
}

// NameOf returns name of value, e.g. the name of a function.
func NameOf(f interface{}) string {
	v := reflect.ValueOf(f)
	if v.Kind() == reflect.Func {
		if rf := runtime.FuncForPC(v.Pointer()); rf != nil {
			return rf.Name()
		}
	}
	return v.String()
}

// Identifier returns just the input again.
func Identity(p []byte) ([][]byte, error) {
	return [][]byte{p}, nil
}

// CreateFixedMapper extract the value from a given fixed json key, e.g.
// "biblio.doi" and the like. Returns a function that maps doc to (value, doc).
func CreateFixedMapper(field string) Mapper {
	if len(field) > 0 && field[0] == '.' {
		// gjson is not jq, we do not use a leading dot, so remove it, if
		// accidentally used here
		field = field[1:]
	}
	f := func(p []byte) ([][]byte, error) {
		result := gjson.GetBytes(p, field)
		// A subtle bug can emerge here: By default we use tab as separator. If
		// the value extracted ends with the separator (e.g. tab), then we get
		// an invalid row. Hence, trim all space.
		key := []byte(strings.TrimSpace(result.String()))
		return [][]byte{key, p}, nil
	}
	return f
}

// MapperTitle extracts (title, doc).
func MapperTitle(p []byte) ([][]byte, error) {
	var (
		doc TitleDoc
		key []byte
	)
	if err := json.Unmarshal(p, &doc); err != nil {
		return nil, err
	} else {
		key = []byte(wsReplacer.Replace(strings.TrimSpace(doc.Title)))
	}
	return [][]byte{key, p}, nil
}

// MapperTitleNormalized extracts (title normalized, doc).
func MapperTitleNormalized(p []byte) (fields [][]byte, err error) {
	if fields, err = MapperTitle(p); err != nil {
		return nil, err
	}
	key := string(fields[0])
	key = wsReplacer.Replace(strings.TrimSpace(key))
	key = strings.ToLower(key)
	key = repeatedWs.ReplaceAllString(key, " ")
	key = nonWord.ReplaceAllString(key, "")
	fields[0] = []byte(key)
	return fields, nil
}

// MapperTitleNormalized extracts (title nysiis, doc).
func MapperTitleNysiis(p []byte) (fields [][]byte, err error) {
	if fields, err = MapperTitle(p); err != nil {
		return nil, err
	}
	key := string(fields[0])
	key = wsReplacer.Replace(strings.TrimSpace(key))
	key = NYSIIS(key)
	fields[0] = []byte(key)
	return fields, nil
}

// MapperTitleSandcrawler extracts (title sandcrawler, doc).
func MapperTitleSandcrawler(p []byte) (fields [][]byte, err error) {
	if fields, err = MapperTitle(p); err != nil {
		return nil, err
	}
	key := string(fields[0])
	key = sandcrawlerSlugify(wsReplacer.Replace(strings.TrimSpace(key)))
	fields[0] = []byte(key)
	return fields, nil
}

// MapperContainerName extracts (container_name, doc).
func MapperContainerName(p []byte) ([][]byte, error) {
	var (
		doc PartialRef
		key []byte
	)
	if err := json.Unmarshal(p, &doc); err != nil {
		return nil, err
	} else {
		key = []byte(wsReplacer.Replace(strings.TrimSpace(doc.ContainerName)))
	}
	return [][]byte{key, p}, nil
}

// MapperContainerNameSandcrawler extracts (container_name, doc).
func MapperContainerNameSandcrawler(p []byte) (fields [][]byte, err error) {
	if fields, err = MapperContainerName(p); err != nil {
		return nil, err
	}
	key := string(fields[0])
	key = sandcrawlerSlugify(wsReplacer.Replace(strings.TrimSpace(key)))
	fields[0] = []byte(key)
	return fields, nil
}

// MapperURLFromRef extracts the (url, doc).
func MapperURLFromRef(p []byte) (fields [][]byte, err error) {
	var ref Ref
	if err = json.Unmarshal(p, &ref); err != nil {
		return nil, err
	}
	fields = [][]byte{
		[]byte(ref.Biblio.Url),
		p,
	}
	return fields, nil
}

// MapperIdentURLFromRef extracts the (work ident, release ident, url, doc).
// Previously: parallel -j 16 --block 100M --pipe "jq -rc '[.work_ident,
// .release_ident, .biblio.url?] | @tsv'" ...
// This implementation seems slightly faster than jq and parallel.
func MapperIdentURLFromRef(p []byte) (fields [][]byte, err error) {
	var ref Ref
	if err = json.Unmarshal(p, &ref); err != nil {
		return nil, err
	}
	fields = [][]byte{
		[]byte(ref.WorkIdent),
		[]byte(ref.ReleaseIdent),
		[]byte(ref.Biblio.Url),
		p,
	}
	return fields, nil
}

// MapperReleaseContainerName extracts a normalized container name.
func MapperReleaseContainerName(p []byte) (fields [][]byte, err error) {
	var (
		doc Release
		key []byte
		w   string
	)
	if err := json.Unmarshal(p, &doc); err != nil {
		return nil, err
	}
	if doc.Container.Name != "" {
		w = doc.Container.Name
	} else if doc.ContainerName != "" {
		w = doc.ContainerName
	} else {
		w = doc.Extra.ContainerName
	}
	key = []byte(sandcrawlerSlugify(wsReplacer.Replace(strings.TrimSpace(w))))
	return [][]byte{key, p}, nil
}

// MapperReleaseResolvedContainerName extracts slug container name from
// resolved container names.
func MapperReleaseResolvedContainerName(p []byte) (fields [][]byte, err error) {
	var (
		doc Release
		key []byte
	)
	if err := json.Unmarshal(p, &doc); err != nil {
		return nil, err
	}
	if doc.Extra.Skate.ResolvedContainerName == "" {
		return nil, nil
	}
	key = []byte(sandcrawlerSlugify(wsReplacer.Replace(strings.TrimSpace(doc.Extra.Skate.ResolvedContainerName))))
	return [][]byte{key, p}, nil
}

func MapperOpenLibraryReleaseNormalizedISBN(p []byte) (fields [][]byte, err error) {
	var (
		doc    Release
		key    []byte
		isbn13 string
	)
	if err := json.Unmarshal(p, &doc); err != nil {
		return nil, err
	}
	// There can be 10 and 13 variants in the data, we always want 13.
	for _, isbn := range doc.ExtIDs.ISBN {
		parsed := ParseIsbn(isbn)
		if len(parsed) > 0 {
			isbn13 = parsed[0]
			break
		}
	}
	if isbn13 == "" {
		return nil, nil
	} else {
		key = []byte(isbn13)
	}
	return [][]byte{key, p}, nil
}

func MapperCdxSummary(p []byte) (fields [][]byte, err error) {
	var (
		cdx cdxSummary
	)
	if err := json.Unmarshal(p, &cdx); err != nil {
		return nil, err
	}
	return [][]byte{[]byte(cdx.Line), p}, nil
}

// MapperPartial works on partial documents.
func MapperPartial(p []byte) (fields [][]byte, err error) {
	// TODO: Group by some normlized container name or identifier.
	return nil, nil
}

// MapperBrefWork maps bref for comparison with other datasets,
// such as COCI (which uses DOI).
func MapperBrefWork(p []byte) (fields [][]byte, err error) {
	var bref BiblioRef
	if err := json.Unmarshal(p, &bref); err != nil {
		return nil, err
	}
	return [][]byte{[]byte(bref.SourceWorkIdent), p}, nil
}

// MapperReleaseWork maps release to work ident.
func MapperReleaseWork(p []byte) (fields [][]byte, err error) {
	var release Release
	if err := json.Unmarshal(p, &release); err != nil {
		return nil, err
	}
	return [][]byte{[]byte(release.WorkID), p}, nil
}

// MapperBrefIdentifierTable generates an id table from biblioref.
func MapperBrefIdentifierTable(p []byte) (field [][]byte, err error) {
	var bref struct {
		SourceReleaseIdent string `json:"source_release_ident,omitempty"`
		TargetReleaseIdent string `json:"target_release_ident,omitempty"`
		SourceDOI          string `json:"source_doi,omitempty"`
		TargetDOI          string `json:"target_doi,omitempty"`
	}
	// There is an issue in the data, just skip over it for the moment.
	// 2021/08/05 12:15:00 json: expected ',' after object field value but found '"': "}
	if err := json.Unmarshal(p, &bref); err != nil {
		return nil, err
	}
	if bref.SourceDOI == "" || bref.TargetDOI == "" {
		return nil, nil
	}
	return [][]byte{
		[]byte(bref.SourceReleaseIdent),
		[]byte(bref.TargetReleaseIdent),
		[]byte(bref.SourceDOI),
		[]byte(bref.TargetDOI),
	}, nil
}

// sandcrawlerSlugify normalizes a string.
func sandcrawlerSlugify(s string) string {
	slug := strings.ToLower(strings.TrimSpace(s))
	for _, prefix := range SandcrawlerPrefixRemove {
		if strings.HasPrefix(slug, prefix) {
			slug = slug[:len(prefix)]
		}
	}
	slug = strings.ReplaceAll(slug, "&apos;", "'")
	for k, v := range SandcrawlerCharMap {
		slug = strings.ReplaceAll(slug, k, v)
	}
	if len(slug) == 0 {
		return slug
	}
	slug = norm.NFKD.String(slug)
	slug = SandcrawlerRemoveCharRegex.ReplaceAllString(slug, "")
	return strings.ToLower(slug)
}