diff options
Diffstat (limited to 'python')
| -rw-r--r-- | python/refcat/tasks.py | 22 | 
1 files changed, 22 insertions, 0 deletions
diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index 3dcdd65..530eb6a 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -552,3 +552,25 @@ class FatcatMapped(Refcat):      def output(self):          return luigi.LocalTarget(path=self.path(ext="tsv.zst"), format=Zstd) + + +class BrefZipDOI(Refcat): +    """ +    Run skate-reduce from two files. +    """ +    def requires(self): +        return { +            "refs": RefsDOI(), +            "fatcat": FatcatDOI(), +        } + +    def run(self): +        output = shellout(r""" +                          skate-reduce -m exact -r doi -F <(zstdcat -T0 {refs}) -L <(zstdcat -T0 {fatcat}) | +                          zstd -c -T0 > {output} +                          """, +                          refs=self.input().get("refs").path, +                          fatcat=self.input().get("fatcat").path) + +    def output(self): +        return luigi.LocalTarget(path=self.path(ext="json.zst"), format=Zstd)  | 
