diff options
| -rw-r--r-- | python/refcat/techreport.py | 20 |
1 files changed, 18 insertions, 2 deletions
diff --git a/python/refcat/techreport.py b/python/refcat/techreport.py index 904f9c9..064e357 100644 --- a/python/refcat/techreport.py +++ b/python/refcat/techreport.py @@ -4,11 +4,27 @@ Tasks for techreport. """ from refcat.tasks import Refcat, OpenCitations +from refcat.base import shellout, Zstd -class COCIStats(Refcat): + +class COCIDOIOnly(Refcat): + """ + Extract DOI-DOI pair, order dois lexicographically. + """ def requires(self): return OpenCitations() def run(self): - print(self.input().path) + """ https://unix.stackexchange.com/a/37470/376 """ + output = shellout(""" + zstdcat -T0 {input} | + tail -n +2 | + cut -d , -f2,3 | + perl -F, -lane 'printf qq[%s\n], join ",", sort @F' | + zstd -c -T0 > {output} + """, input=self.input().path) + luigi.LocalTarget(output).move(self.output().path) + + def output(self): + return luigi.LocalTarget(path=self.path(ext="tsv.zst"), format=Zstd) |