diff options
| -rw-r--r-- | python/refcat/tasks.py | 64 |
1 files changed, 24 insertions, 40 deletions
diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index d3c658d..57f961b 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -1,26 +1,10 @@ #!/usr/bin/env python3 """ -Set of luigi tasks to extract and build various derivations from fatcat -reference data. Reference data can come from metadata or ML extraction -(grobid). - -Rationale is that we successively want to build a derived dataset (citation -graph and various reports) and we expect the data to be messy and partial. We -want to cache intermediate results for a uniform structure of outputs. - -Notes. - -We use a single zstd-compressed input file for easier handling (albeit splits -would be run in parallel by luigi). A sha1sum takes 67 minutes. - -Outputs should be compressed as well to save space. - -Use TMPDIR=... to adjust temporary directory. - -To list available tasks, there is a convenience "run.sh" in the repo: +Set of luigi tasks to derive a citation graph. $ refcat.pyz + ____ __ ________ / __/________ _/ /_ / ___/ _ \/ /_/ ___/ __ `/ __/ @@ -29,35 +13,35 @@ To list available tasks, there is a convenience "run.sh" in the repo: Command line entry point for running various data tasks. - $ refcat [COMMAND | TASK] [OPTIONS] + $ refcat.pyz [COMMAND | TASK] [OPTIONS] + + Commands: ls, ll, deps, tasks, files, config, cat, completion - Commands: ls, ll, deps + To install completion run: + + $ source <(refcat.pyz completion) VERSION 0.1.0 SETTINGS /home/tir/.config/refcat/settings.ini - BASE /magna/.cache - TMPDIR /magna/tmp - - BiblioRef RGSitemapToRelease RefsKeyStats - BiblioRefFromJoin Refcat RefsPMCID - BiblioRefFuzzy Refs RefsPMID - CommonDOI RefsArxiv RefsReleasesMerged - CommonTitles RefsCounter RefsSortedKeys - CommonTitlesLower RefsDOI RefsTitleFrequency - FatcatArxiv RefsFatcatArxivJoin RefsTitles - FatcatDOI RefsFatcatClusterVerify RefsTitlesLower - FatcatPMCID RefsFatcatClusters RefsToRelease - FatcatPMID RefsFatcatDOIJoin ReleaseExportExpanded - FatcatSortedKeys RefsFatcatGroupJoin ReleaseExportReduced - FatcatTitles RefsFatcatPMCIDJoin ReleaseExportTitleOnly - FatcatTitlesLower RefsFatcatPMIDJoin URLList - KeyDistribution RefsFatcatRanked URLTabs - RGSitemapFatcatMerged RefsFatcatSortedKeys - RGSitemapFatcatSortedKeys RefsFatcatTitleLowerJoin + BASE /bigger/.cache + TMPDIR /bigger/tmp + + BrefZipDOI RefsDOI + FatcatArxiv RefsPMCID + FatcatDOI RefsPMID + FatcatMapped RefsToRelease + FatcatPMCID RefsWithUnstructured + FatcatPMID ReleaseExportExpanded + MAGPapers ReleaseExportReduced + OpenLibraryDump URLList + Refcat URLTabs + Refs UnmatchedRefs + RefsArxiv WikipediaCitationsMinimalDataset + Config (e.g. raw input data) taken from $HOME/.config/refcat/settings.ini. --------- +================= TODO and report notes |