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authorMartin Czygan <martin.czygan@gmail.com>2021-05-11 19:50:53 +0200
committerMartin Czygan <martin.czygan@gmail.com>2021-05-11 19:50:53 +0200
commitda83d4584c8f131cb3ad80ed2928a9fd033af5f9 (patch)
treea3935087dd8815ca953ea2fd24740a1e1f4a7670 /skate/cmd/skate-to-doi/main.go
parent4016f2b50bf7b22eeb9eb41cf83d07bf59e8d7b3 (diff)
downloadrefcat-da83d4584c8f131cb3ad80ed2928a9fd033af5f9.tar.gz
refcat-da83d4584c8f131cb3ad80ed2928a9fd033af5f9.zip
rename: skate-to-doi to skate-cleanup
Diffstat (limited to 'skate/cmd/skate-to-doi/main.go')
-rw-r--r--skate/cmd/skate-to-doi/main.go58
1 files changed, 0 insertions, 58 deletions
diff --git a/skate/cmd/skate-to-doi/main.go b/skate/cmd/skate-to-doi/main.go
deleted file mode 100644
index 377383f..0000000
--- a/skate/cmd/skate-to-doi/main.go
+++ /dev/null
@@ -1,58 +0,0 @@
-// Filter to parse out a correctly looking DOI from a field.
-//
-// $ echo "1,xxx 10.123/12312 xxx,3" | skate-to-doi -d , -f 2
-// 1,10.123/12312,3
-//
-// We can use this to sanitize DOI-like fields in the reference dataset.
-
-package main
-
-import (
- "flag"
- "fmt"
- "log"
- "os"
- "regexp"
- "runtime"
- "strings"
-
- "git.archive.org/martin/cgraph/skate/parallel"
-)
-
-var (
- numWorkers = flag.Int("w", runtime.NumCPU(), "number of workers")
- batchSize = flag.Int("b", 100000, "batch size")
- delimiter = flag.String("d", "\t", "delimiter")
- index = flag.Int("f", 1, "one field to cleanup up a doi, 1-indexed")
- bestEffort = flag.Bool("B", false, "only log errors, but do not stop")
- skipNonMatches = flag.Bool("S", false, "do not emit a line for non-matches")
-
- PatDOI = regexp.MustCompile(`10[.][0-9]{1,8}/[^ ]*[\w]`)
-)
-
-func main() {
- flag.Parse()
- pp := parallel.NewProcessor(os.Stdin, os.Stdout, func(p []byte) ([]byte, error) {
- parts := strings.Split(string(p), *delimiter)
- if len(parts) < *index {
- msg := fmt.Sprintf("warn: line has too few fields (%d): %s", len(parts), string(p))
- if *bestEffort {
- log.Println(msg)
- return nil, nil
- } else {
- return nil, fmt.Errorf(msg)
- }
- }
- result := PatDOI.FindString(parts[*index-1])
- if len(result) == 0 && *skipNonMatches {
- return nil, nil
- }
- parts[*index-1] = result
- return []byte(strings.Join(parts, *delimiter)), nil
- })
- pp.NumWorkers = *numWorkers
- pp.BatchSize = *batchSize
- if err := pp.Run(); err != nil {
- log.Fatal(err)
- }
-}