add UnmatchedResolveJournalNames

1 files changed, 22 insertions, 0 deletions

diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py
index 17caf96..4193867 100644
--- a/python/refcat/tasks.py
+++ b/python/refcat/tasks.py
@@ -864,6 +864,28 @@ class UnmatchedMapped(Refcat):
         return luigi.LocalTarget(path=self.path(ext="tsv.zst"), format=Zstd)
 
 
+class UnmatchedResolveJournalNames(Refcat):
+    """
+    Try to resolve journal names so we can match against both abbreviations and
+    full names.
+    """
+    def requires(self):
+        return UnmatchedMapped()
+
+    def run(self):
+        output = shellout("""
+                          zstdcat -T0 {input} |
+                          skate-resolve-journal-name -f 2 -B -A {abbrev}
+                          zstd -T0 -c > {output}
+                          """,
+                          abbrev=settings.JOURNAL_ABBREVIATIONS,
+                          input=self.input().path)
+        luigi.LocalTarget(output).move(self.output().path)
+
+    def output(self):
+        return luigi.LocalTarget(path=self.path(ext="tsv.zst"), format=Zstd)
+
+
 class UnmatchedOpenLibraryMatchTable(Refcat):
     """
     Run matching and write tabular results to file. About 50M rows.