diff options
| author | Martin Czygan <martin.czygan@gmail.com> | 2021-08-05 09:59:07 +0200 |
|---|---|---|
| committer | Martin Czygan <martin.czygan@gmail.com> | 2021-08-05 09:59:07 +0200 |
| commit | e35ad2d4d393318bd36fcee43995bd3bc2989619 (patch) | |
| tree | f97cd620f97ff3b02d85fccd0747640b4506465a | |
| parent | 9560bb1edfc36aa47017077d914e769d4ba97570 (diff) | |
| download | refcat-e35ad2d4d393318bd36fcee43995bd3bc2989619.tar.gz refcat-e35ad2d4d393318bd36fcee43995bd3bc2989619.zip | |
tasks: fix command
| -rw-r--r-- | python/refcat/tasks.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index 908f209..573ec74 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -449,8 +449,8 @@ class BrefDOITable(Refcat): output = shellout(""" zstdcat -T0 {input} | parallel --block 10M -j 20 --pipe - "jq -rc '[.source_release_ident, .target_release_ident, .source_doi, .target_doi] | @tsv' - | zstd -c -T0 > {output} + "jq -rc '[.source_release_ident, .target_release_ident, .source_doi, .target_doi] | @tsv'" | + zstd -c -T0 > {output} """, input=self.input().path) luigi.LocalTarget(output).move(self.output().path) |