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"""
These basically all hit external network services.
"""
import pytest
import elasticsearch
from fuzzycat.simple import *
from fuzzycat.config import settings
@pytest.fixture
def es_client():
return elasticsearch.Elasticsearch(
[settings.get("FATCAT_SEARCH_URL", "https://search.fatcat.wiki:443")])
def test_close_fuzzy_unstructured_matches(es_client):
matches = close_fuzzy_unstructured_matches(
"""Cunningham HB, Weis JJ, Taveras LR, Huerta S. Mesh migration following abdominal hernia repair: a comprehensive review. Hernia. 2019 Apr;23(2):235-243. doi: 10.1007/s10029-019-01898-9. Epub 2019 Jan 30. PMID: 30701369.""",
es_client=es_client)
assert matches
assert matches[0].status.name == "EXACT"
assert matches[0].release.ext_ids.doi == "10.1007/s10029-019-01898-9"
def test_close_fuzzy_biblio_matches(es_client):
matches = close_fuzzy_biblio_matches(dict(
title="Mesh migration following abdominal hernia repair: a comprehensive review",
first_author="Cunningham",
year=2019,
journal="Hernia",
),
es_client=es_client)
assert matches
# TODO: should be "STRONG" or "WEAK" without all authors?
assert matches[0].status.name in ("STRONG", "WEAK", "AMBIGUOUS")
assert matches[0].release.ext_ids.doi == "10.1007/s10029-019-01898-9"
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