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* add 'simple' high-level routines for fuzzy-match-and-verify callsBryan Newbold2021-04-142-0/+316
| | | | | | | Some of these are a little redundant, in that calling code could trivially re-implement. However, I think these are good starters for stable external API interfaces, leaving us room to iterate and refactor lower-level implementations behind the scenes.
* GROBID API unstructured citation parsing utility codeBryan Newbold2021-04-143-1/+258
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* grobid2json helper fileBryan Newbold2021-04-131-0/+212
| | | | | This file has been passed around a couple times and should probably be published as a pypi.org project at some point.
* dynaconf: switch to fuzzycat.config import across projectBryan Newbold2021-04-133-3/+6
| | | | This is the recommended way to use dynaconf.
* upgrade to python3.8Bryan Newbold2021-04-132-3/+3
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* gitlab CI: try 'make deps' and 'make test'Bryan Newbold2021-04-131-5/+3
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* makefile: run common commands inside pipenvBryan Newbold2021-04-131-7/+7
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* makefile: change 'deps' to be simple --dev --deployBryan Newbold2021-04-131-3/+1
| | | | | | | When I ran 'make deps' as-is, my pipenv mutated the Pipfile and started re-locking. This project isn't using 'black' any more, so don't need the --pre flag.
* make fmtBryan Newbold2021-04-132-3/+16
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* update READMEMartin Czygan2021-04-131-0/+8
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* Merge branch 'master' of github.com:miku/fuzzycatMartin Czygan2021-04-121-200/+203
|\ | | | | | | | | * 'master' of github.com:miku/fuzzycat: Bump urllib3 from 1.26.3 to 1.26.4
| * Merge pull request #3 from miku/dependabot/pip/urllib3-1.26.4Martin Czygan2021-04-121-200/+203
| |\ | | | | | | Bump urllib3 from 1.26.3 to 1.26.4
| | * Bump urllib3 from 1.26.3 to 1.26.4dependabot[bot]2021-04-121-200/+203
| |/ | | | | | | | | | | | | | | Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.3 to 1.26.4. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/1.26.3...1.26.4) Signed-off-by: dependabot[bot] <support@github.com>
* | v0.1.19Martin Czygan2021-04-121-1/+1
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* | address es hits.total change in ES7Martin Czygan2021-04-123-6/+28
|/ | | | * https://www.elastic.co/guide/en/elasticsearch/reference/current/breaking-changes-7.0.html
* v0.1.18Martin Czygan2021-03-161-1/+1
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* matching: a list is requiredMartin Czygan2021-03-161-1/+1
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* v0.1.17Martin Czygan2021-02-191-1/+1
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* add missing dependencyMartin Czygan2021-02-191-0/+1
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* update makefileMartin Czygan2021-02-191-17/+17
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* require python 3.6Martin Czygan2021-02-191-1/+1
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* v0.1.16Martin Czygan2021-02-181-1/+1
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* setup: fix caseMartin Czygan2021-02-181-1/+1
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* v0.1.15Martin Czygan2021-02-181-1/+1
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* fix entry pointMartin Czygan2021-02-181-1/+1
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* v0.1.14Martin Czygan2021-02-181-1/+1
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* workaround for a case found in refs:Martin Czygan2021-02-151-0/+6
| | | | | | | | | | | | | | | | | | * https://fatcat.wiki/release/2n7pyugxenb73gope52bn6m2ru * https://fatcat.wiki/release/p4bettvcszgn5d3zls5ogdjk4u Refs: Niaudet P. Steroid-sensitive idiopathic nephrotic syndrome in children. Pediatric Nephrology. 5th ed. Philadelphia: Lippincott Williams & Wilkins, 2004; pp 543–556. Doc: * https://fatcat.wiki/release/lc3d5q62zfa2rjyk2m7nr346nm, T-lymphocyte activation in steroid-sensitive nephrotic syndrome in childhood, by T J Neuhaus, V Shah, R E Callard, T M Barratt
* fix list entriesMartin Czygan2021-02-131-2/+0
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* workaround for datesMartin Czygan2021-02-111-0/+4
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* fix nameMartin Czygan2021-02-111-3/+3
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* update notesMartin Czygan2021-02-112-10/+16
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* Merge pull request #2 from miku/dependabot/pip/cryptography-3.3.2Martin Czygan2021-02-111-58/+28
|\ | | | | Bump cryptography from 3.3.1 to 3.3.2
| * Bump cryptography from 3.3.1 to 3.3.2dependabot[bot]2021-02-111-58/+28
| | | | | | | | | | | | | | | | Bumps [cryptography](https://github.com/pyca/cryptography) from 3.3.1 to 3.3.2. - [Release notes](https://github.com/pyca/cryptography/releases) - [Changelog](https://github.com/pyca/cryptography/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pyca/cryptography/compare/3.3.1...3.3.2) Signed-off-by: dependabot[bot] <support@github.com>
* | add a batch verifier for ref groupsMartin Czygan2021-02-112-0/+76
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* update notesMartin Czygan2021-02-111-0/+7
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* note on extra toolMartin Czygan2021-02-031-2/+16
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* try out xarMartin Czygan2021-02-024-2/+18
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* move initialization closer to useMartin Czygan2021-02-021-1/+1
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* make fmtMartin Czygan2021-02-021-5/+7
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* v0.1.13Martin Czygan2021-02-021-1/+1
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* fix line reading from bytesMartin Czygan2021-02-021-3/+16
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* compression fixes and tweaksMartin Czygan2021-02-021-7/+6
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* add shellout helperMartin Czygan2021-02-023-2/+59
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* update/cleanup lockfileMartin Czygan2021-02-021-6/+6
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* cleanup printMartin Czygan2021-02-021-1/+0
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* add -C flag for compressionMartin Czygan2021-02-021-0/+2
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* add compress kwarg to clusterMartin Czygan2021-02-0210-22/+97
| | | | Will compress intermediate results with zstd (https://git.io/Jt00y9).
* make: converge to fmtMartin Czygan2021-02-021-2/+2
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* add zstandard depMartin Czygan2021-02-022-93/+154
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* add caseMartin Czygan2021-02-013-0/+171
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