diff options
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/data/release/4ne2wuijyjej5mg6gptm4uml24 | 184 | ||||
| -rw-r--r-- | tests/data/release/7n532yhbbjgi5a3fgwsia45aue | 83 | ||||
| -rw-r--r-- | tests/data/verify.csv | 1 |
3 files changed, 268 insertions, 0 deletions
diff --git a/tests/data/release/4ne2wuijyjej5mg6gptm4uml24 b/tests/data/release/4ne2wuijyjej5mg6gptm4uml24 new file mode 100644 index 0000000..29d1c7e --- /dev/null +++ b/tests/data/release/4ne2wuijyjej5mg6gptm4uml24 @@ -0,0 +1,184 @@ +{ + "abstracts": [], + "container_id": "xfv7rdysezhxpa4oce7jejarnq", + "contribs": [ + { + "extra": { + "seq": "first" + }, + "index": 0, + "raw_name": "Alefiya Neemuchwala", + "role": "author" + }, + { + "index": 1, + "raw_name": "Sarah Teatero", + "role": "author" + }, + { + "index": 2, + "raw_name": "Taryn B.T. Athey", + "role": "author" + }, + { + "index": 3, + "raw_name": "Allison McGeer", + "role": "author" + }, + { + "index": 4, + "raw_name": "Nahuel Fittipaldi", + "role": "author" + } + ], + "ext_ids": { + "doi": "10.3201//eid2211.152064", + "pmcid": "PMC5088006", + "pmid": "27767925", + "wikidata_qid": "Q37381946" + }, + "extra": { + "crossref": { + "type": "journal-article" + }, + "pubmed": { + "pub_types": [ + "Journal Article" + ] + } + }, + "ident": "4ne2wuijyjej5mg6gptm4uml24", + "issue": "11", + "pages": "1941-1944", + "publisher": "Centers for Disease Control and Prevention (CDC)", + "refs": [ + { + "extra": { + "pmid": "12791877", + "unstructured": "J Clin Microbiol. 2003 Jun;41(6):2530-6" + }, + "index": 0, + "target_release_id": "lerwdgbz5zauzfomzxqs5ol3b4" + }, + { + "extra": { + "pmid": "25941374", + "unstructured": "Proc Natl Acad Sci U S A. 2015 May 19;112(20):6431-6" + }, + "index": 1, + "target_release_id": "6ud6fxcitzcnzp5htq3tz3nk6e" + }, + { + "extra": { + "pmid": "24554752", + "unstructured": "J Clin Microbiol. 2014 May;52(5):1441-7" + }, + "index": 2, + "target_release_id": "33mlckibibcgbmwmgurgf66vxu" + }, + { + "extra": { + "pmid": "10068604", + "unstructured": "J Infect Dis. 1999 Apr;179(4):1030-3" + }, + "index": 3, + "target_release_id": "2kqcblbck5bdxd2r3dirwkbfg4" + }, + { + "extra": { + "pmid": "21824423", + "unstructured": "BMC Genomics. 2011 Aug 08;12:402" + }, + "index": 4, + "target_release_id": "bz3lzogszjbi7diwpq5unxxkba" + }, + { + "extra": { + "pmid": "22064866", + "unstructured": "Nucleic Acids Res. 2012 Jan;40(1):e6" + }, + "index": 5, + "target_release_id": "25dbsevjtjc63gxos3o5vme35u" + }, + { + "extra": { + "pmid": "19870257", + "unstructured": "J Exp Med. 1934 Mar 31;59(4):441-58" + }, + "index": 6, + "target_release_id": "yhyylmqywjf3pbnh7hrps43csa" + }, + { + "extra": { + "pmid": "25811284", + "unstructured": "Emerg Infect Dis. 2015 Apr;21(4):585-91" + }, + "index": 7, + "target_release_id": "qgms757xzvfotecijqjfwiehqy" + }, + { + "extra": { + "pmid": "18832470", + "unstructured": "Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15961-6" + }, + "index": 8, + "target_release_id": "g72z63d4jvf5pdcsx73hhbmnsm" + }, + { + "extra": { + "pmid": "23002446", + "unstructured": "J Infect Dis. 2012 Dec 1;206(11):1745-52" + }, + "index": 9, + "target_release_id": "ya4tysqyofdb5g77quclvub7xa" + }, + { + "extra": { + "pmid": "25088811", + "unstructured": "Nat Commun. 2014 Aug 04;5:4544" + }, + "index": 10, + "target_release_id": "yj3qz6nzobah7myvtsq2hgb754" + }, + { + "extra": { + "pmid": "15232197", + "unstructured": "Indian J Med Res. 2004 May;119 Suppl:208-12" + }, + "index": 11, + "target_release_id": "q2qa5iz7mfff5nndeid3dox2aq" + }, + { + "extra": { + "pmid": "19079253", + "unstructured": "Nat Methods. 2009 Jan;6(1):67-9" + }, + "index": 12, + "target_release_id": "z7j3lph5sfdhhkwydcardaqlze" + }, + { + "extra": { + "pmid": "19480572", + "unstructured": "Clin Infect Dis. 2009 Jul 1;49(1):85-92" + }, + "index": 13, + "target_release_id": "eqeucep6lvaqrmifc3a7wmcqwm" + }, + { + "extra": { + "pmid": "23028432", + "unstructured": "PLoS One. 2012;7(9):e42304" + }, + "index": 14, + "target_release_id": "cv3lzwwi4nhznleg2ndrxizwfi" + } + ], + "release_stage": "published", + "release_type": "article-journal", + "release_year": 2016, + "revision": "8d5e0b80-ce13-4017-ba3b-5ce0890fe43d", + "state": "active", + "title": "Capsular Switching and Other Large-Scale Recombination Events in Invasive Sequence Type 1 Group BStreptococcus", + "volume": "22", + "work_id": "t5symkic4jhfphrqdlpfjqwlnq" +} diff --git a/tests/data/release/7n532yhbbjgi5a3fgwsia45aue b/tests/data/release/7n532yhbbjgi5a3fgwsia45aue new file mode 100644 index 0000000..c646aee --- /dev/null +++ b/tests/data/release/7n532yhbbjgi5a3fgwsia45aue @@ -0,0 +1,83 @@ +{ + "abstracts": [ + { + "content": "We report several cases of recombination events leading to capsular switching among sequence type (ST) 1 group B Streptococcus strains. These strains otherwise shared a common genome backbone with serotype V ST1 strains. However, the genomes of ST1 serotype V strains and those of serotypes VI, VII, and VIII strains differed substantially.", + "lang": "en", + "mimetype": "text/plain", + "sha1": "63316b21a2aaab7c039eff917610e84d733f0531" + } + ], + "container_id": "xfv7rdysezhxpa4oce7jejarnq", + "contribs": [ + { + "index": 0, + "raw_name": "Alefiya Neemuchwala", + "role": "author" + }, + { + "index": 1, + "raw_name": "Sarah Teatero", + "role": "author" + }, + { + "index": 2, + "raw_name": "Taryn B.T. Athey", + "role": "author" + }, + { + "index": 3, + "raw_name": "Allison McGeer", + "role": "author" + }, + { + "index": 4, + "raw_name": "Nahuel Fittipaldi", + "role": "author" + } + ], + "ext_ids": { + "doaj": "e76ed92724754e159a0386a4a5aa6442", + "doi": "10.3201/eid2211.152064" + }, + "extra": { + "country": "us", + "doaj": { + "keywords": [ + "group B Streptococcus", + "capsular switching", + "recombination", + "whole-genome sequencing", + "bacteria", + "streptococci" + ], + "subject": [ + { + "code": "R", + "scheme": "LCC", + "term": "Medicine" + }, + { + "code": "RC109-216", + "scheme": "LCC", + "term": "Infectious and parasitic diseases" + } + ] + }, + "release_month": 11 + }, + "ident": "7n532yhbbjgi5a3fgwsia45aue", + "issue": "11", + "language": "en", + "license_slug": "cc-by", + "pages": "1941-1944", + "publisher": "Centers for Disease Control and Prevention", + "refs": [], + "release_stage": "published", + "release_type": "article-journal", + "release_year": 2016, + "revision": "2c1d95aa-c8e2-449e-bb79-e9bb969597c9", + "state": "active", + "title": "Capsular Switching and Other Large-Scale Recombination Events in Invasive Sequence Type 1 Group B Streptococcus", + "volume": "22", + "work_id": "mu25u2pmz5eprajfkdyejlf3ym" +} diff --git a/tests/data/verify.csv b/tests/data/verify.csv index 3526ecd..5da9dc3 100644 --- a/tests/data/verify.csv +++ b/tests/data/verify.csv @@ -253,3 +253,4 @@ ixktsx5gmnbonl5zxubhxhfgya,q5yheygzs5fxnahqihwejepn6u,Status.STRONG,SLUG_TITLE_A n3ijnxlzzbf3tgz44ic2llutja,fy4tfzhcjnh7rj2r4v2mnyslne,Status.AMBIGUOUS,UNKNOWN kqxf5nychfcwnpdhi5djyza5ai,wwlxihtcv5a6je6yyfdq4mpk6y,, e5jgy6dncjftlpid6w5vj56t3m,fqqzuchxtba5fayk6vlnoapz4a,Status.STRONG,DATACITE_RELATED_ID +4ne2wuijyjej5mg6gptm4uml24,7n532yhbbjgi5a3fgwsia45aue,, |