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| -rw-r--r-- | tests/data/release/3x7jp34oabbxrhbgaptcvqinqi | 80 | ||||
| -rw-r--r-- | tests/data/release/tfdotrpmtvdw7moy674lkmffcu | 120 | ||||
| -rw-r--r-- | tests/data/verify.csv | 1 |
3 files changed, 201 insertions, 0 deletions
diff --git a/tests/data/release/3x7jp34oabbxrhbgaptcvqinqi b/tests/data/release/3x7jp34oabbxrhbgaptcvqinqi new file mode 100644 index 0000000..c2e2c0d --- /dev/null +++ b/tests/data/release/3x7jp34oabbxrhbgaptcvqinqi @@ -0,0 +1,80 @@ +{ + "abstracts": [ + { + "content": "The Baltic tellin Limecola balthica is one of the most common bivalves in intertidal areas in the Northern Hemisphere. Over the last 2 decades, the species has been suffering from a decrease in adult survival in the European Wadden Sea. While several factors such as global warming and fisheries have been suggested to influence the population dynamics of this bivalve mollusc, the potential role of diseases has never been investigated. In this study, we investigated whether disseminated neoplasia, a common proliferative disorder in bivalve molluscs, could play a potential role in the recent population decline of Baltic tellins in the Wadden Sea. We conducted a field survey in the Dutch Wadden Sea to (1) determine whether the disease occurs in Baltic tellins in the Wadden Sea and (2) quantify the occurrence and severity of the disease via histology. Disseminated neoplasia occurred in L. balthica at each of the 10 sampled locations with very high prevalences (21-89%) compared to those reported elsewhere for this species. The highest severity category was found in 8 to 87% of affected individuals, with severity generally increasing with prevalence. Disseminated neoplasia usually increases mortality among affected individuals and may also be associated with important sub-lethal effects, especially regarding gametogenesis. Thus, we suggest that disseminated neoplasia may play a key role in the population dynamics of the Baltic tellin, the extent of which remains to be investigated in future studies.", + "lang": "en", + "mimetype": "text/plain", + "sha1": "61c101d654c071dc0a96a7c1bb2ee0d56f4ccceb" + } + ], + "container_id": "to323l4vlrbfhial3g4bvzkdpi", + "contribs": [ + { + "extra": { + "seq": "first" + }, + "index": 0, + "raw_name": "A Dairain", + "role": "author", + "surname": "Dairain" + }, + { + "given_name": "MY", + "index": 1, + "raw_name": "MY Engelsma", + "role": "author", + "surname": "Engelsma" + }, + { + "index": 2, + "raw_name": "J Drent", + "role": "author", + "surname": "Drent" + }, + { + "index": 3, + "raw_name": "R Dekker", + "role": "author", + "surname": "Dekker" + }, + { + "given_name": "DW", + "index": 4, + "raw_name": "DW Thieltges", + "role": "author", + "surname": "Thieltges" + } + ], + "ext_ids": { + "doi": "10.3354/dao03448", + "pmid": "32103823" + }, + "extra": { + "crossref": { + "subject": [ + "Aquatic Science", + "Ecology, Evolution, Behavior and Systematics" + ], + "type": "journal-article" + }, + "pubmed": { + "pub_types": [ + "Journal Article" + ] + } + }, + "ident": "3x7jp34oabbxrhbgaptcvqinqi", + "language": "en", + "pages": "89-96", + "publisher": "Inter-Research Science Center", + "refs": [], + "release_date": "2020-02-27", + "release_stage": "published", + "release_type": "article-journal", + "release_year": 2020, + "revision": "17a428b2-9d66-48a6-b422-aa8a23ab13d1", + "state": "active", + "title": "High prevalences of disseminated neoplasia in the Baltic tellin Limecola balthica in the Wadden Sea", + "volume": "138", + "work_id": "uzqqdebn4zgf3px5gjyym3cwku" +} diff --git a/tests/data/release/tfdotrpmtvdw7moy674lkmffcu b/tests/data/release/tfdotrpmtvdw7moy674lkmffcu new file mode 100644 index 0000000..ba4659b --- /dev/null +++ b/tests/data/release/tfdotrpmtvdw7moy674lkmffcu @@ -0,0 +1,120 @@ +{ + "abstracts": [ + { + "content": "This work aimed at investigating the presence of disseminated neoplasia in the Baltic clam Limecola balthica. We conducted a field survey in the Dutch Wadden Sea (10 sampling sites) to determine the prevalence of the disease in Baltic tellins in the Wadden Sea and to quantify its severity via histology. Briefly, bivalves were sampled by brushing away the first 10 cm of the sediment surface. Organisms were then collected by hand and keep in the Davidson's fixative on back in the lab. Tissues of samples were then collected and embedded in paraffin blocks. Histological sections of 5 µm thickness were stained with haematoxylin and eosin (H&E), and the slides examined for the presence of disseminated neoplasia using light microscopy. If neoplastic cells were present, we determined the disease severity according to Christensen et al. (1974) and Pekkarinen (1993) as follows: stage 1, local neoplastic cells noticed in the gills; stage 2, gills totally invaded with neoplastic cells; stage 3, spots of neoplastic cells in other tissues than gills, and stage 4, widespread neoplastic cells. For each sampling site, we calculated the prevalence of the disease and the prevalence of each stage of the disease. The data set is an excel file, with different columns, specifying where and when bivalves were sampled, the type of environment (sandy mud, muddy sand or sand), the density of the bivalve at each location, and the stage of the disease (O to 4).", + "lang": "en", + "mimetype": "text/plain", + "sha1": "8fa5bbb893d213bb85b260074784dec21745a97f" + } + ], + "contribs": [ + { + "creator_id": "4tspry3zzvcnthoda2xf5qofuq", + "index": 0, + "raw_name": "Dairain, A. (Annabelle)", + "role": "author" + }, + { + "creator_id": "s6q7753pjrbttnnet2er2il6mq", + "index": 1, + "raw_name": "Engelsma, M.Y. (Marc)", + "role": "author" + }, + { + "creator_id": "hzl6m3c3qvenhfk74ktjwgufwq", + "index": 2, + "raw_name": "Drent, J. (Jan)", + "role": "author" + }, + { + "index": 3, + "raw_name": "Dekker, R. (Rob)", + "role": "author" + }, + { + "creator_id": "wegtinfzl5c6nhkgmeubr6w2ti", + "index": 4, + "raw_name": "Thieltges, D.W. (David)", + "role": "author" + }, + { + "extra": { + "type": "Other" + }, + "given_name": "Part Of Wageningen University", + "raw_name": "Wageningen Bioveterinary Research, Part Of Wageningen University", + "surname": "Wageningen Bioveterinary Research" + }, + { + "extra": { + "type": "Other" + }, + "given_name": "Department Of Coastal Systems", + "raw_name": "NIOZ Royal Netherlands Institute For Sea Research, Department Of Coastal Systems", + "surname": "NIOZ Royal Netherlands Institute For Sea Research" + } + ], + "ext_ids": { + "doi": "10.4121/uuid:6d4e69a4-d373-42c8-999e-dfa5d3ea340b" + }, + "extra": { + "datacite": { + "license": [ + { + "rightsUri": "info:eu-repo/semantics/openAccess" + }, + { + "rightsUri": "https://creativecommons.org/publicdomain/zero/1.0" + } + ], + "metadataVersion": 1, + "resourceType": "Dataset", + "resourceTypeGeneral": "Dataset", + "subjects": [ + { + "subject": "Bivalvia" + }, + { + "subject": "Marine Ecology" + }, + { + "subject": "Mollusca" + }, + { + "subject": "disease" + }, + { + "subject": "0602 - Ecology", + "subjectScheme": "Australian and New Zealand Standard Research Classification (ANZSRC), 2008" + }, + { + "subject": "0608 - Zoology", + "subjectScheme": "Australian and New Zealand Standard Research Classification (ANZSRC), 2008" + }, + { + "subject": "0707 - Veterinary Sciences", + "subjectScheme": "Australian and New Zealand Standard Research Classification (ANZSRC), 2008" + } + ] + } + }, + "ident": "tfdotrpmtvdw7moy674lkmffcu", + "language": "en", + "license_slug": "CC-0", + "publisher": "4TU.Centre for Research Data", + "refs": [ + { + "extra": { + "doi": "10.3354/dao03448" + }, + "index": 0 + } + ], + "release_stage": "published", + "release_type": "dataset", + "release_year": 2020, + "revision": "8c87d33d-cec5-4bf5-8e49-a427a871f2ed", + "state": "active", + "title": "Data presented in the paper 'High prevalences of disseminated neoplasia in the Baltic tellin Limecola balthica in the Wadden Sea'", + "work_id": "dhd7hpmbcrc53d5awb2tpltokq" +} diff --git a/tests/data/verify.csv b/tests/data/verify.csv index 8394744..f725310 100644 --- a/tests/data/verify.csv +++ b/tests/data/verify.csv @@ -163,3 +163,4 @@ qqsdtxm5hjadta3jf7bgt3bnm4,fupvtkn7t5d5xohffx5bt4yn24,Status.AMBIGUOUS, jbodjm2njjdmhknlgxnicefwru,trdosozt55cndbnsfmcm46xckm,Status.STRONG,VERSIONED_DOI 6gnyb4zr25fodcooyfpyfd75bi,wt2qhxiz75bhfjgrq36376huyq,Status.AMBIGUOUS, eaypmw4g2zbave557q3bfxstsu,pmr3siuyx5hzngoi4ve4mptxxu,Status.STRONG,SLUG_TITLE_AUTHOR_MATCH +3x7jp34oabbxrhbgaptcvqinqi,tfdotrpmtvdw7moy674lkmffcu,Status.DIFFERENT,RELEASE_TYPE |