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import pytest
from bs4 import BeautifulSoup
from fixtures import *
from fatcat_tools.importers import Bs4XmlFilePusher, Bs4XmlLinesPusher, JalcImporter
@pytest.fixture(scope="function")
def jalc_importer(api):
with open("tests/files/ISSN-to-ISSN-L.snip.txt", "r") as issn_file:
yield JalcImporter(
api, issn_file, extid_map_file="tests/files/example_map.sqlite3", bezerk_mode=True
)
@pytest.fixture(scope="function")
def jalc_importer_existing(api):
with open("tests/files/ISSN-to-ISSN-L.snip.txt", "r") as issn_file:
yield JalcImporter(
api, issn_file, extid_map_file="tests/files/example_map.sqlite3", bezerk_mode=False
)
def test_jalc_importer(jalc_importer):
last_index = jalc_importer.api.get_changelog(limit=1)[0].index
with open("tests/files/jalc_lod_sample.xml", "r") as f:
jalc_importer.bezerk_mode = True
counts = Bs4XmlFilePusher(jalc_importer, f, "Description").run()
assert counts["insert"] == 2
assert counts["exists"] == 0
assert counts["skip"] == 0
# fetch most recent editgroup
change = jalc_importer.api.get_changelog_entry(index=last_index + 1)
eg = change.editgroup
assert eg.description
assert "jalc" in eg.description.lower()
assert eg.extra["git_rev"]
assert "fatcat_tools.JalcImporter" in eg.extra["agent"]
last_index = jalc_importer.api.get_changelog(limit=1)[0].index
with open("tests/files/jalc_lod_sample.xml", "r") as f:
jalc_importer.bezerk_mode = False
jalc_importer.reset()
counts = Bs4XmlFilePusher(jalc_importer, f, "Description").run()
assert counts["insert"] == 0
assert counts["exists"] == 2
assert counts["skip"] == 0
assert last_index == jalc_importer.api.get_changelog(limit=1)[0].index
def test_jalc_importer_lines(jalc_importer):
last_index = jalc_importer.api.get_changelog(limit=1)[0].index
with open("tests/files/jalc_rdf_sample_100.xml", "r") as f:
jalc_importer.bezerk_mode = True
counts = Bs4XmlLinesPusher(jalc_importer, f, "<rdf:Description").run()
assert counts["insert"] == 93
assert counts["exists"] == 0
assert counts["skip"] == 0
# fetch most recent editgroup
change = jalc_importer.api.get_changelog_entry(index=last_index + 1)
eg = change.editgroup
assert eg.description
assert "jalc" in eg.description.lower()
assert eg.extra["git_rev"]
assert "fatcat_tools.JalcImporter" in eg.extra["agent"]
last_index = jalc_importer.api.get_changelog(limit=1)[0].index
with open("tests/files/jalc_rdf_sample_100.xml", "r") as f:
jalc_importer.bezerk_mode = False
jalc_importer.reset()
counts = Bs4XmlLinesPusher(jalc_importer, f, "<rdf:Description").run()
assert counts["insert"] == 0
assert counts["exists"] == 93
assert counts["skip"] == 0
assert last_index == jalc_importer.api.get_changelog(limit=1)[0].index
def test_jalc_xml_parse(jalc_importer):
with open("tests/files/jalc_lod_sample.xml", "r") as f:
soup = BeautifulSoup(f, "xml")
r = jalc_importer.parse_record(soup.find_all("Description")[0])
print(r.extra)
assert r.title == "New carbides in the Ni-Ti-Mo-C system"
assert r.subtitle is None
assert r.original_title == "Ni-Ti-Mo-C系に出現する新炭化物相について"
assert r.publisher == "Japan Society of Powder and Powder Metallurgy"
assert r.release_type == "article-journal"
assert r.release_stage == "published"
assert r.license_slug is None
assert r.ext_ids.doi == "10.2497/jjspm.36.898"
assert r.language == "ja"
assert r.volume == "36"
assert r.issue == "8"
assert r.pages == "898-902"
assert r.release_year == 1989
# matched by ISSN, so shouldn't be in there?
# assert extra['container_name'] == "International Journal of Quantum Chemistry"
assert len(r.contribs) == 4
assert r.contribs[0].raw_name == "Yasuhiko Hashimoto"
assert r.contribs[0].given_name == "Yasuhiko"
assert r.contribs[0].surname == "Hashimoto"
assert r.contribs[0].extra["original_name"]["raw_name"] == "橋本 雍彦"
assert r.contribs[0].extra["original_name"]["given_name"] == "雍彦"
assert r.contribs[0].extra["original_name"]["surname"] == "橋本"
assert r.contribs[3].raw_name == "Teruo Takahashi"
assert r.contribs[3].given_name == "Teruo"
assert r.contribs[3].surname == "Takahashi"
assert r.contribs[3].extra["original_name"]["raw_name"] == "高橋 輝男"
assert r.contribs[3].extra["original_name"]["given_name"] == "輝男"
assert r.contribs[3].extra["original_name"]["surname"] == "高橋"
assert not r.refs
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