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import base64
import json
import os
import pytest
from fixtures import *
from fatcat_tools.importers import GrobidMetadataImporter, LinePusher
"""
WARNING: these tests are currently very fragile because they have database
side-effects. Should probably be disabled or re-written.
"""
@pytest.fixture(scope="function")
def grobid_metadata_importer(api):
yield GrobidMetadataImporter(api)
def test_grobid_metadata_parse(grobid_metadata_importer):
with open("tests/files/example_grobid_metadata_lines.tsv", "r") as f:
raw = json.loads(f.readline().split("\t")[4])
re = grobid_metadata_importer.parse_grobid_json(raw)
assert re
assert (
re.title
== "PEMBELAJARAN FISIKA DENGAN PENDEKATAN KETERAMPILAN PROSES MELALUI METODE DEMONSTRASI MENGGUNAKAN MEDIA RIIL DAN MEDIA VIRTUIL DITINJAU DARI MOTIVASI DAN GAYA BERFIKIR SISWA"
)
assert len(re.contribs) == 5
print(re.contribs)
assert re.contribs[0].raw_name == "Wahyu Ary"
assert re.contribs[0].given_name == "Wahyu"
assert re.contribs[0].surname == "Ary"
assert re.publisher is None
if re.extra:
assert re.extra.get("container_name") is None
assert len(re.refs) == 27
def test_file_metadata_parse(grobid_metadata_importer):
with open("tests/files/example_grobid_metadata_lines.tsv", "r") as f:
f.readline()
raw = f.readline().split("\t")
# randomize sha1 so tests are repeatable
random_sha1 = "sha1:{}".format(base64.b32encode(os.urandom(20)).decode("utf-8").upper())
fe = grobid_metadata_importer.parse_file_metadata(
random_sha1, json.loads(raw[1]), raw[2], int(raw[3])
)
assert fe
# assert fe.sha1 == "d4a841744719518bf8bdd5d91576ccedc55efbb5" # "sha1:2SUEC5CHDFIYX6F52XMRK5WM5XCV565V"
assert fe.md5 is None
assert fe.mimetype == "application/pdf"
assert fe.size == 142710
assert fe.urls[1].url.startswith("http://via.library.depaul.edu")
assert fe.urls[1].rel == "web"
assert fe.urls[0].url.startswith("https://web.archive.org/")
assert fe.urls[0].rel == "webarchive"
assert len(fe.release_ids) == 0
def test_grobid_metadata_importer(grobid_metadata_importer):
last_index = grobid_metadata_importer.api.get_changelog(limit=1)[0].index
with open("tests/files/example_grobid_metadata_lines.tsv", "r") as f:
grobid_metadata_importer.bezerk_mode = True
counts = LinePusher(grobid_metadata_importer, f).run()
assert counts["insert"] == 10
assert counts["inserted.release"] == 10
assert counts["exists"] == 0
assert counts["skip"] == 0
# fetch most recent editgroup
change = grobid_metadata_importer.api.get_changelog_entry(index=last_index + 1)
eg = change.editgroup
assert eg.description
assert "grobid" in eg.description.lower()
assert eg.extra["git_rev"]
assert "fatcat_tools.GrobidMetadataImporter" in eg.extra["agent"]
with open("tests/files/example_grobid_metadata_lines.tsv", "r") as f:
grobid_metadata_importer.reset()
grobid_metadata_importer.bezerk_mode = False
counts = LinePusher(grobid_metadata_importer, f).run()
assert counts["insert"] == 0
assert counts["inserted.release"] == 0
assert counts["exists"] == 10
assert counts["skip"] == 0
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