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import sys
from typing import Any, Dict, List, Optional
import fatcat_openapi_client
from fatcat_openapi_client import DefaultApi, CreatorEntity
from fatcat_tools.normal import clean_str
from .common import EntityImporter
def value_or_none(e: Any) -> Any:
if type(e) == dict:
e = e.get("value")
if type(e) == str and len(e) == 0:
e = None
# TODO: this is probably bogus; patched in desperation; remove?
if e:
try:
e.encode()
except UnicodeEncodeError:
# Invalid JSON?
print("BAD UNICODE")
return None
return e
class OrcidImporter(EntityImporter):
def __init__(self, api: DefaultApi, **kwargs) -> None:
eg_desc = kwargs.get(
"editgroup_description",
"Automated import of ORCID metadata, from official bulk releases.",
)
eg_extra = kwargs.get("editgroup_extra", dict())
eg_extra["agent"] = eg_extra.get("agent", "fatcat_tools.OrcidImporter")
super().__init__(api, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs)
def want(self, raw_record: Any) -> bool:
return True
def parse_record(self, obj: Dict[str, Any]) -> Optional[CreatorEntity]:
"""
obj is a python dict (parsed from json).
returns a CreatorEntity
"""
if "person" not in obj:
return False
name = obj["person"]["name"]
if not name:
return None
extra = None
given = value_or_none(name.get("given-names"))
sur = value_or_none(name.get("family-name"))
display = value_or_none(name.get("credit-name"))
if display is None:
# TODO: sorry human beings
if given and sur:
display = "{} {}".format(given, sur)
elif sur:
display = sur
elif given:
display = given
orcid = obj["orcid-identifier"]["path"]
if not self.is_orcid(orcid):
sys.stderr.write("Bad ORCID: {}\n".format(orcid))
return None
display = clean_str(display)
if not display:
# must have *some* name
return None
ce = CreatorEntity(
orcid=orcid,
given_name=clean_str(given),
surname=clean_str(sur),
display_name=display,
extra=extra,
)
return ce
def try_update(self, ce: CreatorEntity) -> bool:
existing = None
try:
existing = self.api.lookup_creator(orcid=ce.orcid)
except fatcat_openapi_client.rest.ApiException as err:
if err.status != 404:
raise err
# eventually we'll want to support "updates", but for now just skip if
# entity already exists
if existing:
self.counts["exists"] += 1
return False
return True
def insert_batch(self, batch: List[CreatorEntity]) -> None:
self.api.create_creator_auto_batch(
fatcat_openapi_client.CreatorAutoBatch(
editgroup=fatcat_openapi_client.Editgroup(
description=self.editgroup_description, extra=self.editgroup_extra
),
entity_list=batch,
)
)
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