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-rw-r--r--python/tests/files/example_ingest.json2
-rw-r--r--python/tests/files/example_ingest_html.json1
-rw-r--r--python/tests/files/example_ingest_xml.json1
-rw-r--r--python/tests/import_ingest.py68
4 files changed, 69 insertions, 3 deletions
diff --git a/python/tests/files/example_ingest.json b/python/tests/files/example_ingest.json
index cea67fa7..a9791587 100644
--- a/python/tests/files/example_ingest.json
+++ b/python/tests/files/example_ingest.json
@@ -1,2 +1,2 @@
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+{"file_meta": {"sha1hex": "00242a192acc258bdfdb151943419437f440c313", "md5hex": "f4de91152c7ab9fdc2a128f962faebff", "sha256hex": "ffc1005680cb620eec4c913437dfabbf311b535cfe16cbaeb2faec1f92afc362", "size_bytes": 255629, "mimetype": "application/pdf"}, "request": {"ingest_type": "pdf", "ingest_request_source": "fatcat-changelog", "link_source": "doi", "link_source_id":"10.123/abc","ext_ids": {"doi": "10.123/abc"}}, "terminal": {"terminal_url": "http://journals.plos.org/plosmedicine/article/file?id=10.1371/journal.pmed.0020124&type=printable", "terminal_dt": "20170227164644", "terminal_sha1hex": "00242a192acc258bdfdb151943419437f440c313"}, "cdx": { "datetime": "20170227164644", "url": "http://journals.plos.org/plosmedicine/article/file?id=10.1371/journal.pmed.0020124&type=printable" }, "grobid": {"status_code": 200 }, "hit": true, "status": "success"}
{"request":{"ingest_type":"pdf","ingest_request_source":"fatcat-changelog","base_url":"https://doi.org/10.3917/popav.748.0017","release_stage":"published","fatcat":{"release_ident":"weeqjkvsx5abze2bhithyrx6wu","work_ident":"ujatsk25yrdw5gofubw7nogzgq"},"ext_ids":{"doi":"10.3917/popav.748.0017"},"link_source":"doi","link_source_id":"10.3917/popav.748.0017"},"hit":false,"hops":["https://doi.org/10.3917/popav.748.0017"],"status":"wayback-error","error_message":"replay fetch didn't return X-Archive-Src in headers"}
diff --git a/python/tests/files/example_ingest_html.json b/python/tests/files/example_ingest_html.json
new file mode 100644
index 00000000..6c646814
--- /dev/null
+++ b/python/tests/files/example_ingest_html.json
@@ -0,0 +1 @@
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diff --git a/python/tests/files/example_ingest_xml.json b/python/tests/files/example_ingest_xml.json
new file mode 100644
index 00000000..2f525998
--- /dev/null
+++ b/python/tests/files/example_ingest_xml.json
@@ -0,0 +1 @@
+{"cdx": {"datetime": "20200710091403", "mimetype": "text/xml", "sha1b32": "PWMQ2L4RHPJ3NVWC66GIJC36L5FXPOM6", "sha1hex": "7d990d2f913bd3b6d6c2f78c848b7e5f4b77b99e", "status_code": 200, "surt": "py,una,iics,scielo)/scieloorg/php/articlexml.php?lang=en&pid=s1683-98032015000200002", "url": "http://scielo.iics.una.py/scieloOrg/php/articleXML.php?pid=S1683-98032015000200002&lang=en", "warc_csize": 12108, "warc_offset": 94730348, "warc_path": "SCIELO-CRAWL-2020-07-20200710082036515-00773-00843-wbgrp-svc206/SCIELO-CRAWL-2020-07-20200710085423121-00779-13069~wbgrp-svc206.us.archive.org~8443.warc.gz"}, "file_meta": {"md5hex": "cda133a706ce02a07fae8bd8d2694a2a", "mimetype": "application/jats+xml", "sha1hex": "7d990d2f913bd3b6d6c2f78c848b7e5f4b77b99e", "sha256hex": "be982ca211e4debb3f93f36d9f9dc1c80f99a8809eb4c41569b2b9503c27e751", "size_bytes": 49242}, "hit": true, "hops": ["http://scielo.iics.una.py/scielo.php?script=sci_abstract&pid=S1683-98032015000200002&lng=en&nrm=iso&tlng=en", "http://scielo.iics.una.py/scieloOrg/php/articleXML.php?pid=S1683-98032015000200002&lang=en"], "request": {"link_source": "doi", "ingest_request_source": "fatcat-changelog","base_url": "http://scielo.iics.una.py/scielo.php?script=sci_abstract&pid=S1683-98032015000200002&lng=en&nrm=iso&tlng=en", "ext_ids": {"doi": "10.123/abc"}, "fatcat": {"release_ident": null}, "ingest_type": "xml"}, "status": "success", "terminal": {"terminal_dt": "20200710091403", "terminal_sha1hex": "7d990d2f913bd3b6d6c2f78c848b7e5f4b77b99e", "terminal_status_code": 200, "terminal_url": "http://scielo.iics.una.py/scieloOrg/php/articleXML.php?pid=S1683-98032015000200002&lang=en"}, "xml_meta": {"status": "success"}}
diff --git a/python/tests/import_ingest.py b/python/tests/import_ingest.py
index 4a46232a..92539f1a 100644
--- a/python/tests/import_ingest.py
+++ b/python/tests/import_ingest.py
@@ -2,7 +2,7 @@
import json
import pytest
-from fatcat_tools.importers import IngestFileResultImporter, JsonLinePusher
+from fatcat_tools.importers import IngestFileResultImporter, IngestWebResultImporter, JsonLinePusher
from fixtures import *
@@ -10,6 +10,10 @@ from fixtures import *
def ingest_importer(api):
yield IngestFileResultImporter(api)
+@pytest.fixture(scope="function")
+def ingest_web_importer(api):
+ yield IngestWebResultImporter(api)
+
# TODO: use API to check that entities actually created...
def test_ingest_importer_basic(ingest_importer):
with open('tests/files/example_ingest.json', 'r') as f:
@@ -41,6 +45,60 @@ def test_ingest_importer(ingest_importer):
assert counts['exists'] == 1
assert counts['skip'] == 1
+def test_ingest_importer_xml(ingest_importer):
+ last_index = ingest_importer.api.get_changelog(limit=1)[0].index
+ with open('tests/files/example_ingest_xml.json', 'r') as f:
+ ingest_importer.bezerk_mode = True
+ counts = JsonLinePusher(ingest_importer, f).run()
+ print(counts)
+ assert counts['insert'] == 1
+ assert counts['exists'] == 0
+ assert counts['skip'] == 0
+
+ # fetch most recent editgroup
+ change = ingest_importer.api.get_changelog_entry(index=last_index+1)
+ eg = change.editgroup
+ assert eg.description
+ assert "crawled from web" in eg.description.lower()
+ assert eg.extra['git_rev']
+ assert "fatcat_tools.IngestFileResultImporter" in eg.extra['agent']
+
+ # re-import should skip
+ with open('tests/files/example_ingest_xml.json', 'r') as f:
+ ingest_importer.reset()
+ ingest_importer.bezerk_mode = False
+ counts = JsonLinePusher(ingest_importer, f).run()
+ assert counts['insert'] == 0
+ assert counts['exists'] == 1
+ assert counts['skip'] == 0
+
+def test_ingest_importer_web(ingest_web_importer):
+ last_index = ingest_web_importer.api.get_changelog(limit=1)[0].index
+ with open('tests/files/example_ingest_html.json', 'r') as f:
+ ingest_web_importer.bezerk_mode = True
+ counts = JsonLinePusher(ingest_web_importer, f).run()
+ print(counts)
+ assert counts['insert'] == 1
+ assert counts['exists'] == 0
+ assert counts['skip'] == 0
+
+ # fetch most recent editgroup
+ change = ingest_web_importer.api.get_changelog_entry(index=last_index+1)
+ eg = change.editgroup
+ assert eg.description
+ assert "crawled from web" in eg.description.lower()
+ assert eg.extra['git_rev']
+ assert "fatcat_tools.IngestWebResultImporter" in eg.extra['agent']
+
+ # re-import should skip
+ with open('tests/files/example_ingest_html.json', 'r') as f:
+ ingest_web_importer.reset()
+ ingest_web_importer.bezerk_mode = False
+ counts = JsonLinePusher(ingest_web_importer, f).run()
+ assert counts['insert'] == 0
+ assert counts['exists'] == 1
+ assert counts['skip'] == 0
+
def test_ingest_importer_stage(ingest_importer, api):
"""
Tests that ingest importer correctly handles release stage matching
@@ -57,7 +115,7 @@ def test_ingest_importer_stage(ingest_importer, api):
with open('tests/files/example_ingest.json', 'r') as f:
raw = json.loads(f.readline())
for row in test_table:
- print(row)
+ #print(row)
# set dummy record stage
eg = quick_eg(api)
@@ -94,6 +152,12 @@ def test_ingest_dict_parse(ingest_importer):
def test_ingest_dict_parse_old(ingest_importer):
with open('tests/files/example_ingest.old.json', 'r') as f:
raw = json.loads(f.readline())
+
+ # ancient ingest requests had no type; skip them
+ f = ingest_importer.parse_record(raw)
+ assert f == None
+ raw['request']['ingest_type'] = 'pdf'
+
f = ingest_importer.parse_record(raw)
assert f.sha1 == "00242a192acc258bdfdb151943419437f440c313"
assert f.md5 == "f4de91152c7ab9fdc2a128f962faebff"
generated by cgit v1.2.3 (git 2.39.1) at 2024-11-22 07:22:41 +0000