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-rw-r--r--python/fatcat_web/templates/entity_base.html5
-rw-r--r--python/fatcat_web/templates/entity_macros.html109
-rw-r--r--python/fatcat_web/templates/openlibrary_view_fuzzy_refs.html25
-rw-r--r--python/fatcat_web/templates/reference_match.html93
-rw-r--r--python/fatcat_web/templates/refs_macros.html132
-rw-r--r--python/fatcat_web/templates/release_view.html27
-rw-r--r--python/fatcat_web/templates/release_view_fuzzy_refs.html27
-rw-r--r--python/fatcat_web/templates/wikipedia_view_fuzzy_refs.html23
8 files changed, 427 insertions, 14 deletions
diff --git a/python/fatcat_web/templates/entity_base.html b/python/fatcat_web/templates/entity_base.html
index 36280f5d..52acd70a 100644
--- a/python/fatcat_web/templates/entity_base.html
+++ b/python/fatcat_web/templates/entity_base.html
@@ -85,7 +85,10 @@
{{ entity_tab("coverage", "Coverage", "/coverage") }}
{% elif entity_type == "release" and entity.state != 'deleted' %}
{{ entity_tab("contribs", "Authors", "/contribs", entity._authors|count ) }}
- {{ entity_tab("references", "References", "/references", entity.refs|count) }}
+ {% if entity.state == 'active' %}
+ {{ entity_tab("refs-out", "References", "/refs-out") }}
+ {{ entity_tab("refs-in", "Cited By", "/refs-in") }}
+ {% endif %}
{% endif %}
{{ entity_tab("metadata", "Metadata", "/metadata") }}
</div>
diff --git a/python/fatcat_web/templates/entity_macros.html b/python/fatcat_web/templates/entity_macros.html
index 50f45753..6b565f69 100644
--- a/python/fatcat_web/templates/entity_macros.html
+++ b/python/fatcat_web/templates/entity_macros.html
@@ -387,3 +387,112 @@ yellow
</table>
{%- endmacro %}
+
+{# this is useful for things like showing lists of releases in tables #}
+{% macro release_summary(release) %}
+ <b><a href="/release/{{ release.ident }}">{{ release.title }}</a></b>
+ {% if release.release_type not in ["article-journal", "paper-conference"] %}
+ <b>[{{ release.release_type or "unknown-type" }}]</b>
+ {% endif %}
+ {% if release.contribs %}<br>{% endif %}
+ {% for contrib in release.contribs[:8] %}
+ {% if contrib.creator %}
+ <a href="/contib/{{ contrib.creator.ident }}" style="color: black;">{{ contrib.creator.display_name }}</a>
+ {% else %}
+ {{ contrib.raw_name }}
+ {%- endif %}
+ {%- if not loop.last %}, {% endif %}
+ {% endfor %}
+ {% if release.contribs | length > 8 %} <i>(+ more)</i> {%endif %}
+ {% if release.release_year or release.container or (release.extra and release.extra.container_name) %}<br>{% endif %}
+ {% if release.release_year %}
+ {% if release.release_date %}
+ <span title="{{ release.release_date }}">{{ release.release_year }}</span>
+ {% else %}
+ {{ release.release_year }}
+ {% endif %}
+ &nbsp;
+ {% endif %}
+ {% if release.container %}
+ <a href="/container/{{ release.container.ident }}" style="color: black;"><i>{{ release.container.name }}</i></a>
+ {% elif release.extra and release.extra.container_name %}
+ <i>{{ release.extra.container_name }}</i>
+ {% endif %}
+
+ {% if release.release_stage == "submitted" %}
+ &nbsp;<b style="color: brown; text-transform: uppercase;">pre-print</b>
+ {% elif release.release_stage and release.release_stage != "published" %}
+ &nbsp;<b style="color: brown; text-transform: uppercase;">{{ release.release_stage }} version</b>
+ {% elif not release.release_stage %}
+ &nbsp;<b style="color: brown; text-transform: uppercase;">unpublished</b>
+ {% endif %}
+<br>
+ {% if release.version %}
+ <span style="color:green">version:{{ release.version }}</span>&nbsp;
+ {% endif %}
+ {% if release.number %}
+ <span style="color:green">number:{{ release.number }}</span>&nbsp;
+ {% endif %}
+ {% if release.ext_ids.doi %}
+ <a href="https://doi.org/{{ release.ext_ids.doi }}" style="color:green;">doi:{{ release.ext_ids.doi }}</a>&nbsp;
+ {% endif %}
+ {# TODO: links #}
+ {% if release.ext_ids.arxiv %}
+ <a href="#" style="color:green;">arXiv:{{ release.ext_ids.arxiv }}</a>&nbsp;
+ {% endif %}
+ {% if release.ext_ids.pmcid %}
+ <a href="#" style="color:green;">pmcid:{{ release.ext_ids.pmcid }}</a>&nbsp;
+ {% endif %}
+ {% if release.ext_ids.pmid %}
+ <a href="#" style="color:green;">pmid:{{ release.ext_ids.pmid }}</a>&nbsp;
+ {% endif %}
+ {% if release.ext_ids.dblp %}
+ <a href="#" style="color:green;">dblp:{{ release.ext_ids.dblp }}</a>&nbsp;
+ {% endif %}
+{% endmacro %}
+
+{# similar to the release_summary above, but for CSL-JSON #}
+{% macro csl_summary(csl) %}
+ <b>{{ csl.title }}</b>
+ {% if csl.title and csl.author %}<br>{% endif %}
+ {% if csl.author %}
+ {% for author in csl.author[:8] %}
+ {% if author.literal %}
+ {{ author.literal }}
+ {% elif author.raw_name %}
+ {{ author.raw_name }}
+ {% elif author.family and author.given %}
+ {{ author.given }} {{ author.family }}
+ {% elif author.family %}
+ {{ author.family }}
+ {% elif author.name %}
+ {# DEPRECATED: was used by refs code path for a while. Delete in, eg, year 2022 #}
+ {{ author.name }}
+ {% endif %}
+ {%- if not loop.last %}, {% endif %}
+ {% endfor %}
+ {% if csl.author | length > 8 %} <i>(+ more)</i> {%endif %}
+ {% endif %}
+
+ {% if csl.issued or csl["container-title"] %}<br>{% endif %}
+ {% if csl.issued and csl.issued is mapping %}
+ {% if csl.issued['date-parts'] %}
+ {{ csl.issued['date-parts'][0][0] }} &nbsp;
+ {% elif csl.issued.raw %}
+ {{ csl.issued.raw }} &nbsp;
+ {% endif %}
+ {% endif %}
+ {% if csl["container-title"] %}
+ <i>{{ csl["container-title"] }}</i>
+ {% endif %}
+ <br>
+ {% if csl.volume %}
+ <span style="color:green">volume:{{ csl.volume}}</span>&nbsp;
+ {% endif %}
+ {% if csl.DOI %}
+ <a href="https://doi.org/{{ csl.DOI }}" style="color:green;">doi:{{ csl.DOI }}</a>&nbsp;
+ {% endif %}
+ {% if csl.URL %}
+ <a href="{{ csl.URL }}" style="color:green;">url:{{ csl.URL }}</a>&nbsp;
+ {% endif %}
+{% endmacro %}
diff --git a/python/fatcat_web/templates/openlibrary_view_fuzzy_refs.html b/python/fatcat_web/templates/openlibrary_view_fuzzy_refs.html
new file mode 100644
index 00000000..21bf76f2
--- /dev/null
+++ b/python/fatcat_web/templates/openlibrary_view_fuzzy_refs.html
@@ -0,0 +1,25 @@
+{% extends "base.html" %}
+{% import "refs_macros.html" as refs_macros %}
+
+{% block title %}Open Library Refs{% endblock %}
+
+{% block fullbody %}
+<h1 class="ui header">
+ {% if hits.result_refs and hits.result_refs[0].ref.target_unstructured %}
+ <i>{{ hits.result_refs[0].ref.target_unstructured }}</i>
+ {% endif %}
+ <span class="sub header"><a href="https://openlibrary.org/works/{{ openlibrary_id }}"><code>https://openlibrary.org/works/{{ openlibrary_id }}</code></a></span>
+</h1>
+
+{% if direction == "in" %}
+ <h3>Cited By</h3>
+ <p>This page lists references to this book from other works (eg, journal articles).
+{% elif direction == "out" %}
+ <h3>References</h3>
+ <i>Refernces from this book to other entities.</i>
+{% endif %}
+
+{{ refs_macros.refs_table(hits, direction) }}
+
+{% endblock %}
+
diff --git a/python/fatcat_web/templates/reference_match.html b/python/fatcat_web/templates/reference_match.html
new file mode 100644
index 00000000..f2335f52
--- /dev/null
+++ b/python/fatcat_web/templates/reference_match.html
@@ -0,0 +1,93 @@
+{% extends "base.html" %}
+{% import "entity_macros.html" as entity_macros %}
+{% import "edit_macros.html" as edit_macros %}
+
+{% block body %}
+
+<h1>Reference Fuzzy Match Tool</h1>
+
+<form class="ui form" id="reference_match" method="POST" action="/reference/match">
+ <input type="hidden" name="csrf_token" value="{{ csrf_token() }}"/>
+
+ <div class="ui segment">
+ <h3>Parse Citation</h3>
+
+ <p>Enter a citation string here and we will try to parse it (using GROBID)
+ into a structured format, then match against the catalog.
+
+ {{ edit_macros.form_field_basic(form.raw_citation) }}
+
+ <button class="ui primary submit button right floated" type="submit" name="submit_type" value="parse">
+ Parse
+ </button>
+ <br clear="all">
+ </div>
+
+ {% if grobid_status == "success" and grobid_dict %}
+ <div class="ui positive message">
+ <div class="header">Parsed Citation String</div>
+ {{ entity_macros.extra_metadata(grobid_dict) }}
+ <p><i>See below for fuzzy match results</i>
+ </div>
+ {% endif %}
+
+ <div class="ui segment">
+ <h3>Fuzzy Match Metadata</h3>
+
+ <p>Enter whatever bibliographic metadata fields you know, and we will try to
+ match to catalog entries.
+
+ <p><b>NOTE:</b> if you already know a persistent identifier (like a DOI), you
+ should use the <a href="/release/lookup">lookup tool</a> instead.
+
+ <br>
+ <div class="ui equal width fields">
+ {{ edit_macros.form_field_basic(form.title) }}
+ </div>
+ <div class="ui equal width fields">
+ {{ edit_macros.form_field_basic(form.first_author) }}
+ </div>
+ <div class="ui equal width fields">
+ {{ edit_macros.form_field_basic(form.journal) }}
+ </div>
+ <div class="ui equal width fields">
+ {{ edit_macros.form_field_basic(form.year) }}
+ {{ edit_macros.form_field_basic(form.volume) }}
+ {{ edit_macros.form_field_basic(form.issue) }}
+ {{ edit_macros.form_field_basic(form.pages) }}
+ </div>
+
+ <button class="ui primary submit button right floated" type="submit" name="submit_type" value="match">
+ Match
+ </button>
+ <br clear="all">
+ </div>
+
+</form>
+
+{% if matches is defined %}
+ <h3>Matched Releases</h3>
+
+ {% if not matches %}
+ <p><i>No matches found</i>
+ {% endif %}
+
+ <table class="ui very basic celled table">
+ <tbody>
+ {% for match in matches %}
+ <tr><td class="collapsing center aligned">
+ <br><b>{{ match.status.name }}</b>
+ <br>{{ match.reason.name }}
+ <td class="">
+ {{ entity_macros.release_summary(match.release) }}
+ <td class="">
+ {% if match.access_options %}
+ <a href="{{ match.access_options[0].access_url}}" class="ui tiny green active button">{{ match.access_options[0].access_type.name }}</a>
+ {% endif %}
+ {% endfor %}
+ </tbody>
+ </table>
+
+{% endif %}
+
+{% endblock %}
diff --git a/python/fatcat_web/templates/refs_macros.html b/python/fatcat_web/templates/refs_macros.html
new file mode 100644
index 00000000..47ea2dcf
--- /dev/null
+++ b/python/fatcat_web/templates/refs_macros.html
@@ -0,0 +1,132 @@
+{% import "entity_macros.html" as entity_macros %}
+
+{% macro pagination_row(hits, with_links=False) %}
+ {% if with_links and hits.offset %}
+ <a href="?offset={{ hits.offset - hits.limit }}">&laquo; prev</a> &nbsp;
+ {% endif %}
+ {% if hits.count_returned == 0 %}
+ Showing 0 references
+ {% else %}
+ Showing {{ "{:,}".format(hits.offset + 1) }} - {{ "{:,}".format(hits.offset + hits.count_returned) }} of {{ "{:,}".format(hits.count_total) }} references
+ {% endif %}
+ {% if with_links and hits.count_total != hits.count_returned and hits.offset + hits.limit < hits.count_total %}
+ &nbsp;<a href="?offset={{ hits.offset + hits.limit }}">next &raquo;</a>
+ {% endif %}
+{% endmacro %}
+
+{% macro refs_table(hits, direction) %}
+<div class="ui warning message">
+ <div class="header">
+ Fuzzy reference matching is a work in progress!
+ </div>
+ Read more about quality, completeness, and caveats <a href="https://guide.fatcat.wiki/reference_graph.html">in the fatcat guide</a>.
+</div>
+
+<table class="ui table">
+<thead>
+ <tr><th colspan="3">
+ {{ pagination_row(hits, with_links=False) }}
+ (in {{ hits.query_wall_time_ms }}ms)
+</thead>
+<tbody>
+{% if hits.count_total == 0 %}
+ <tr><td class="ui placeholder segment">
+ <div class="ui icon header">
+ <i class="unlink icon"></i>
+ No References Found
+ </div>
+{% endif %}
+{% for row in hits.result_refs %}
+ {% set release = row.release %}
+ <tr>
+ <td class="collapsing left aligned top aligned">
+ {# TODO: ref_locator? #}
+ {% if direction == "out" %}
+ {% if row.ref.ref_key %}
+ <code title="index={{ row.ref.ref_index }}">[{{ row.ref.ref_key }}]</code><br>
+ {% endif %}
+ {% endif %}
+
+ {% if row.ref.match_status == "exact" %}
+ {% set match_icon = "linkify" %}
+ {% elif row.ref.match_status == "unmatched" %}
+ {% set match_icon = "question circle outline" %}
+ {% else %}
+ {% set match_icon = "magic" %}
+ {% endif %}
+ <i class="{{ match_icon }} icon" title="{{ row.ref.match_status }} {{ row.ref.match_reason }}"></i><br>
+ {% if row.ref.match_provenance %}
+ via {{ row.ref.match_provenance }}<br>
+ {% endif %}
+
+ <td class="">
+ {% if release %}
+ {{ entity_macros.release_summary(release) }}
+ {% elif direction == "in" and row.ref.source_wikipedia_article %}
+ {% set wiki_lang = row.ref.source_wikipedia_article.split(':')[0] %}
+ {% set wiki_article = ':'.join(row.ref.source_wikipedia_article.split(':')[1:]) %}
+ <b>
+ <a href="https://{{ wiki_lang }}.wikipedia.org/wiki/{{ wiki_article.replace(' ', '_') }}">
+ {{ wiki_article }}
+ </a>
+ [wikipedia]
+ </b>
+ <br>
+ <span style="color:green;">lang:{{ wiki_lang }}</span>&nbsp;
+ <a href="/wikipedia/{{ wiki_lang }}:{{ wiki_article.replace(' ', '_') }}/refs-out" style="color:green;">[references]</a>&nbsp;
+ {% elif direction == "out" and row.ref.target_unstructured %}
+ <code>{{ row.ref.target_unstructured }}</code>
+ {% if row.ref.target_openlibrary_work %}
+ <br>
+ <a href="https://openlibrary.org/{{ row.ref.target_openlibrary_work }}" style="color:green;">openlibrary:{{ row.ref.target_openlibrary_work }}</a>&nbsp;
+ <a href="/openlibrary/{{ row.ref.target_openlibrary_work}}/refs-in" style="color:green;">[cited-by]</a>&nbsp;
+ {% endif %}
+ {% elif direction == "out" and row.ref.target_csl %}
+ {{ entity_macros.csl_summary(row.ref.target_csl) }}
+ {% else %}
+ <i>blank</i>
+ {% endif %}
+ <td class="center aligned">
+ {% if row.access %}
+ {% for access in row.access %}
+ <a href="{{ access.access_url}}" class="ui green label" style="background-color: #2ca048;">
+ {%- if access.access_type.name == "wayback" %}
+ web.archive.org
+ {%- elif access.access_type.name == "ia_file" -%}
+ archive.org
+ {%- else -%}
+ {{ access.access_type.name }}
+ {%- endif -%}
+ {%- if access.mimetype == "application/pdf" %}
+ [PDF]
+ {%- elif access.mimetype == "text/html" %}
+ [HTML]
+ {%- endif -%}
+ </a>
+ <br>
+ {% endfor %}
+ {% elif direction == "out" and row.ref.target_unstructured %}
+ <form class="ui form" id="reference_match" method="POST" action="/reference/match">
+ <input type="hidden" name="csrf_token" value="{{ csrf_token() }}"/>
+ <input type="hidden" name="raw_citation" value="{{ row.ref.target_unstructured }}">
+ <button class="ui tiny primary submit button" type="submit" name="submit_type" value="parse">
+ re-parse
+ </button>
+ </form>
+ {% endif %}
+{% endfor %}
+</tbody>
+<tfoot>
+ <tr><th colspan="3">
+ <div style="float: right;">
+ <a href="{{ request.path }}.json?{{ request.query_string.decode() }}">JSON</a>
+ </div>
+ {% if hits.count_returned != hits.count_total %}
+ <center>
+ {{ pagination_row(hits, with_links=True) }}
+ </center>
+ {% endif %}
+</tfoot>
+</table>
+{% endmacro %}
+
diff --git a/python/fatcat_web/templates/release_view.html b/python/fatcat_web/templates/release_view.html
index abf7ace0..4652f4a2 100644
--- a/python/fatcat_web/templates/release_view.html
+++ b/python/fatcat_web/templates/release_view.html
@@ -84,9 +84,9 @@
Published
{% if release.container.ident %}
in <a href="/container/{{ release.container.ident }}"><span itemprop="name">{{ release.container.name }}</span></a>
- {% elif release.extra and release.extra.container_name %}
+ {%- elif release.extra and release.extra.container_name %}
in <span itemprop="name">{{ release.extra.container_name }}</span>
- {% endif %}
+ {%- endif %}
{% else %}
Released
{% if release.release_type %}
@@ -95,26 +95,27 @@
{% if release.container %}
in <a href="/container/{{ release.container.ident }}"><span itemprop="name">{{ release.container.name }}</span></a>
{% endif %}
- {% endif %}
+ {% endif -%}
{% if release.publisher %}
by <span itemprop="publisher">{{ release.publisher }}</span>
{%- endif %}.
<p>
- {% if release.volume != None %}
- Volume {{ release.volume }}
- {%- if release.issue != None %}, {% endif %}
- {% endif %}
- {% if release.issue != None %}
- Issue {{ release.issue}}
+ {% set comma = joiner(", ") %}
+ {% if release.release_year != None %}
+ {{ release.release_year }} &nbsp;
{% endif %}
- {% if release.pages != None %}
+ {% if release.volume != None %}
+ {{- comma() }}Volume {{ release.volume -}}
+ {%- endif %}
+ {%- if release.issue != None %}
+ {{- comma() }}Issue {{ release.issue -}}
+ {%- endif %}
+ {%- if release.pages != None %}
+ {{- comma() }}
{% if release.pages[0].isdigit() %}p{% endif -%}
{{ release.pages }}
{% endif %}
- {% if release.release_year != None %}
- ({{ release.release_year }})
- {% endif %}
</div>
{% if release.abstracts != [] %}
diff --git a/python/fatcat_web/templates/release_view_fuzzy_refs.html b/python/fatcat_web/templates/release_view_fuzzy_refs.html
new file mode 100644
index 00000000..8cba4f4e
--- /dev/null
+++ b/python/fatcat_web/templates/release_view_fuzzy_refs.html
@@ -0,0 +1,27 @@
+{% set release = entity %}
+{% set entity_view = "refs-" + direction %}
+{% set entity_type = "release" %}
+{% import "refs_macros.html" as refs_macros %}
+{% extends "entity_base.html" %}
+
+
+{% block entity_main %}
+
+{% if direction == "in" %}
+ <h3>Cited By</h3>
+ <i>References to this release by other works.</i>
+{% elif direction == "out" %}
+ <h3>References</h3>
+ <i>NOTE: currently batch computed and may include additional references sources, or be missing recent changes, compared to entity reference list.</i>
+
+ {% if hits.count_total == 0 and release.refs %}
+ <div class="ui positive message">
+ <p>No <i>fuzzy</i> references found, but there are <a href="/release/{{ release.ident }}/references">{{ release.refs|count }} legacy references</a>
+ </div>
+ {% endif %}
+{% endif %}
+
+{{ refs_macros.refs_table(hits, direction) }}
+
+{% endblock %}
+
diff --git a/python/fatcat_web/templates/wikipedia_view_fuzzy_refs.html b/python/fatcat_web/templates/wikipedia_view_fuzzy_refs.html
new file mode 100644
index 00000000..3e1453c1
--- /dev/null
+++ b/python/fatcat_web/templates/wikipedia_view_fuzzy_refs.html
@@ -0,0 +1,23 @@
+{% extends "base.html" %}
+{% import "refs_macros.html" as refs_macros %}
+
+{% block title %}Wikipedia Refs{% endblock %}
+
+{% block fullbody %}
+<h1 class="ui header">
+ [{{ wiki_lang }}] {{ wiki_article }}
+ <span class="sub header"><a href="{{ wiki_url }}"><code>{{ wiki_url }}</code></a></span>
+</h1>
+
+{% if direction == "in" %}
+ <h3>Cited By</h3>
+ <p>This page lists references to a wikipedia article, from other works (eg, journal articles).
+{% elif direction == "out" %}
+ <h3>References</h3>
+ <i>Refernces from wikipedia article to other entities.</i>
+{% endif %}
+
+{{ refs_macros.refs_table(hits, direction) }}
+
+{% endblock %}
+