diff options
Diffstat (limited to 'python/fatcat_tools/importers/datacite.py')
| -rw-r--r-- | python/fatcat_tools/importers/datacite.py | 54 |
1 files changed, 0 insertions, 54 deletions
diff --git a/python/fatcat_tools/importers/datacite.py b/python/fatcat_tools/importers/datacite.py index d5622960..d4d7a9f5 100644 --- a/python/fatcat_tools/importers/datacite.py +++ b/python/fatcat_tools/importers/datacite.py @@ -12,7 +12,6 @@ import collections import datetime import json import re -import sqlite3 import sys from typing import Any, Dict, List, Optional, Sequence, Set, Tuple @@ -248,15 +247,6 @@ class DataciteImporter(EntityImporter): ) self.create_containers = kwargs.get("create_containers", True) - extid_map_file = kwargs.get("extid_map_file") - self.extid_map_db = None - if extid_map_file: - db_uri = "file:{}?mode=ro".format(extid_map_file) - print("Using external ID map: {}".format(db_uri), file=sys.stderr) - self.extid_map_db = sqlite3.connect(db_uri, uri=True) - else: - print("Not using external ID map", file=sys.stderr) - self.read_issn_map_file(issn_map_file) self.debug = debug self.insert_log_file = insert_log_file @@ -264,42 +254,6 @@ class DataciteImporter(EntityImporter): print("datacite with debug={}".format(self.debug), file=sys.stderr) - def lookup_ext_ids(self, doi: str) -> Dict[str, Any]: - """ - Return dictionary of identifiers referring to the same things as the given DOI. - """ - if self.extid_map_db is None: - return dict( - core_id=None, - pmid=None, - pmcid=None, - wikidata_qid=None, - arxiv_id=None, - jstor_id=None, - ) - row = self.extid_map_db.execute( - "SELECT core, pmid, pmcid, wikidata FROM ids WHERE doi=? LIMIT 1", [doi.lower()] - ).fetchone() - if row is None: - return dict( - core_id=None, - pmid=None, - pmcid=None, - wikidata_qid=None, - arxiv_id=None, - jstor_id=None, - ) - row = [str(cell or "") or None for cell in row] - return dict( - core_id=row[0], - pmid=row[1], - pmcid=row[2], - wikidata_qid=row[3], - # TODO: - arxiv_id=None, - jstor_id=None, - ) - def parse_record(self, obj: Dict[str, Any]) -> Optional[ReleaseEntity]: """ Mapping datacite JSON to ReleaseEntity. @@ -706,8 +660,6 @@ class DataciteImporter(EntityImporter): if release_month: extra["release_month"] = release_month - extids = self.lookup_ext_ids(doi=doi) - # Assemble release. re = fatcat_openapi_client.ReleaseEntity( work_id=None, @@ -722,12 +674,6 @@ class DataciteImporter(EntityImporter): publisher=publisher, ext_ids=fatcat_openapi_client.ReleaseExtIds( doi=doi, - pmid=extids["pmid"], - pmcid=extids["pmcid"], - wikidata_qid=extids["wikidata_qid"], - core=extids["core_id"], - arxiv=extids["arxiv_id"], - jstor=extids["jstor_id"], ), contribs=contribs, volume=volume, |