diff options
| -rw-r--r-- | python/fatcat_tools/importers/common.py | 11 | ||||
| -rw-r--r-- | python/fatcat_tools/importers/ingest.py | 32 | ||||
| -rw-r--r-- | python/tests/files/example_fileset_ingest_result.json | 20 | ||||
| -rw-r--r-- | python/tests/import_ingest.py | 63 |
4 files changed, 110 insertions, 16 deletions
diff --git a/python/fatcat_tools/importers/common.py b/python/fatcat_tools/importers/common.py index cd51a24c..475cb97a 100644 --- a/python/fatcat_tools/importers/common.py +++ b/python/fatcat_tools/importers/common.py @@ -916,3 +916,14 @@ def make_kafka_consumer( ) print("Consuming from kafka topic {}, group {}".format(topic_name, group)) return consumer + + +def filesets_very_similar(a: FilesetEntity, b: FilesetEntity) -> bool: + """ + This helper method checks if two Fileset entities are effectively equivalent: same set of files with comparable hashes. + + Uses a set() of SHA1 hashes to test for equivalence. + """ + a_hashes = set([f.sha1 for f in a.manifest]) + b_hashes = set([f.sha1 for f in b.manifest]) + return a == b diff --git a/python/fatcat_tools/importers/ingest.py b/python/fatcat_tools/importers/ingest.py index 62e0e854..c8d04d6f 100644 --- a/python/fatcat_tools/importers/ingest.py +++ b/python/fatcat_tools/importers/ingest.py @@ -11,7 +11,7 @@ from fatcat_openapi_client import ( WebcaptureEntity, ) -from .common import EntityImporter, make_rel_url +from .common import EntityImporter, filesets_very_similar, make_rel_url class IngestFileResultImporter(EntityImporter): @@ -693,9 +693,6 @@ class IngestFilesetResultImporter(IngestFileResultImporter): rel="webarchive-base", ) ) - # TODO: repository-base - # TODO: web-base - if strategy == "archiveorg-fileset-bundle" and row.get("archiveorg_item_name"): urls.append( fatcat_openapi_client.FilesetUrl( @@ -727,6 +724,15 @@ class IngestFilesetResultImporter(IngestFileResultImporter): rel="repository-base", ) ) + elif row.get("terminal"): + # fallback generic web URL + urls.append( + fatcat_openapi_client.FilesetUrl( + url=row["terminal"]["terminal_url"], + rel="web", + ) + ) + return urls def parse_record(self, row: Dict[str, Any]) -> FilesetEntity: @@ -781,7 +787,7 @@ class IngestFilesetResultImporter(IngestFileResultImporter): self.counts["skip-partial-file-info"] += 1 return None if ingest_file.get("platform_url"): - # XXX: should we include this? + # TODO: should we include this? fsf.extra["original_url"] = ingest_file["platform_url"] if ingest_file.get("terminal_url") and ingest_file.get("terminal_dt"): fsf.extra[ @@ -805,25 +811,25 @@ class IngestFilesetResultImporter(IngestFileResultImporter): # check for existing edits-in-progress with same URL for other in self._entity_queue: - # XXX: how to duplicate check? - if other.original_url == fse.original_url: + if filesets_very_similar(other, fse): self.counts["skip-in-queue"] += 1 + self.counts["skip"] += 1 return False # lookup sha1, or create new entity (TODO: API doesn't support this yet) # existing = None # NOTE: in lieu of existing checks (by lookup), only allow one fileset per release - release = self.api.get_release(fse.release_ids[0], expand="filesets") - if release.filesets: - # XXX: how to duplicate check filesets? + if not self.bezerk_mode: + release = self.api.get_release(fse.release_ids[0], expand="filesets") # check if this is an existing match, or just a similar hit - for other in release.filesets: - if fse.original_url == other.original_url: - # TODO: compare very similar timestamps of same time (different formats) + for other in release.filesets or []: + if filesets_very_similar(other, fse): self.counts["exists"] += 1 return False + # for now, being conservative and just skipping if release has any other fileset self.counts["skip-release-has-fileset"] += 1 + self.counts["skip"] += 1 return False return True diff --git a/python/tests/files/example_fileset_ingest_result.json b/python/tests/files/example_fileset_ingest_result.json new file mode 100644 index 00000000..6b460b33 --- /dev/null +++ b/python/tests/files/example_fileset_ingest_result.json @@ -0,0 +1,20 @@ 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diff --git a/python/tests/import_ingest.py b/python/tests/import_ingest.py index d9e7d294..d86d6d7b 100644 --- a/python/tests/import_ingest.py +++ b/python/tests/import_ingest.py @@ -5,6 +5,7 @@ from fixtures import * from fatcat_tools.importers import ( IngestFileResultImporter, + IngestFilesetResultImporter, IngestWebResultImporter, JsonLinePusher, ) @@ -20,6 +21,11 @@ def ingest_web_importer(api): yield IngestWebResultImporter(api) +@pytest.fixture(scope="function") +def ingest_fileset_importer(api): + yield IngestFilesetResultImporter(api) + + # TODO: use API to check that entities actually created... def test_ingest_importer_basic(ingest_importer): with open("tests/files/example_ingest.json", "r") as f: @@ -58,7 +64,6 @@ def test_ingest_importer_xml(ingest_importer): with open("tests/files/example_ingest_xml.json", "r") as f: ingest_importer.bezerk_mode = True counts = JsonLinePusher(ingest_importer, f).run() - print(counts) assert counts["insert"] == 1 assert counts["exists"] == 0 assert counts["skip"] == 0 @@ -86,7 +91,6 @@ def test_ingest_importer_web(ingest_web_importer): with open("tests/files/example_ingest_html.json", "r") as f: ingest_web_importer.bezerk_mode = True counts = JsonLinePusher(ingest_web_importer, f).run() - print(counts) assert counts["insert"] == 1 assert counts["exists"] == 0 assert counts["skip"] == 0 @@ -139,7 +143,6 @@ def test_ingest_importer_stage(ingest_importer, api): ingest_importer.reset() ingest_importer.push_record(raw) counts = ingest_importer.finish() - print(counts) assert counts["total"] == 1 assert counts[row["status"]] == 1 @@ -182,3 +185,57 @@ def test_ingest_dict_parse_old(ingest_importer): if u.rel == "webarchive": assert u.url.startswith("https://web.archive.org/") assert len(f.release_ids) == 1 + + +def test_ingest_fileset_dict_parse(ingest_fileset_importer): + with open("tests/files/example_fileset_ingest_result.json", "r") as f: + raw = json.loads(f.readline()) + fs = ingest_fileset_importer.parse_record(raw) + assert len(fs.manifest) == 3 + assert fs.manifest[0].sha1 == "c0669e84e7b9052cc0f342e8ce7d31d59956326a" + assert fs.manifest[0].md5 == "caf4d9fc2c6ebd0d9251ac84e0b6b006" + assert fs.manifest[0].extra["mimetype"] == "application/x-hdf" + assert fs.manifest[0].size == 16799750 + assert fs.manifest[0].path == "N2 on food R_2010_03_25__10_53_27___4___1_features.hdf5" + assert ( + fs.manifest[0].extra["original_url"] + == "https://zenodo.org/api/files/563203f6-6de5-46d9-b305-ba42604f2508/N2%20on%20food%20R_2010_03_25__10_53_27___4___1_features.hdf5" + ) + assert len(fs.urls) == 2 + for u in fs.urls: + if u.rel == "web": + assert u.url == "https://zenodo.org/record/1028059" + if u.rel == "archive-base": + assert u.url == "https://archive.org/download/zenodo.org-1028059/" + assert len(fs.release_ids) == 1 + + +def test_ingest_fileset_importer(ingest_fileset_importer): + last_index = ingest_fileset_importer.api.get_changelog(limit=1)[0].index + with open("tests/files/example_fileset_ingest_result.json", "r") as f: + ingest_fileset_importer.bezerk_mode = True + counts = JsonLinePusher(ingest_fileset_importer, f).run() + assert counts["insert"] == 7 + assert counts["exists"] == 0 + assert counts["skip"] == 13 + assert counts["skip-release-not-found"] == 13 + + # fetch most recent editgroup + change = ingest_fileset_importer.api.get_changelog_entry(index=last_index + 1) + eg = change.editgroup + assert eg.description + assert "filesets crawled from web" in eg.description.lower() + assert eg.extra["git_rev"] + assert "fatcat_tools.IngestFilesetResultImporter" in eg.extra["agent"] + + # re-insert; should skip + with open("tests/files/example_fileset_ingest_result.json", "r") as f: + ingest_fileset_importer.reset() + ingest_fileset_importer.bezerk_mode = False + counts = JsonLinePusher(ingest_fileset_importer, f).run() + + assert counts["insert"] == 0 + assert counts["exists"] == 0 + assert counts["skip"] == 20 + assert counts["skip-release-not-found"] == 13 + assert counts["skip-release-has-fileset"] == 7 |