diff options
author | Bryan Newbold <bnewbold@robocracy.org> | 2021-09-08 17:49:57 -0700 |
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committer | Bryan Newbold <bnewbold@robocracy.org> | 2021-10-14 18:11:12 -0700 |
commit | 70bdcb1ba7ce4aeb423fd6c5ff0ac002302fa1e9 (patch) | |
tree | e180f86665a672414d8ffefe003703ab74edee81 /python/tests | |
parent | 4be667616ae209fa0efaaa2350c1b75eacf0e344 (diff) | |
download | fatcat-70bdcb1ba7ce4aeb423fd6c5ff0ac002302fa1e9.tar.gz fatcat-70bdcb1ba7ce4aeb423fd6c5ff0ac002302fa1e9.zip |
generic fileset importer class, with test coverage
Diffstat (limited to 'python/tests')
-rw-r--r-- | python/tests/files/fileset_ltjp7k2nrbes3or5h4na5qgxlu.json | 1 | ||||
-rw-r--r-- | python/tests/import_fileset_generic.py | 59 |
2 files changed, 60 insertions, 0 deletions
diff --git a/python/tests/files/fileset_ltjp7k2nrbes3or5h4na5qgxlu.json b/python/tests/files/fileset_ltjp7k2nrbes3or5h4na5qgxlu.json new file mode 100644 index 00000000..6ba9d573 --- /dev/null +++ b/python/tests/files/fileset_ltjp7k2nrbes3or5h4na5qgxlu.json @@ -0,0 +1 @@ +{"extra":{"cdl_dash":{"version":1}},"ident":"ltjp7k2nrbes3or5h4na5qgxlu","manifest":[{"extra":{"mimetype":"text/plain"},"md5":"742c40404c9a4dbbd77c0985201c639f","path":"070111_LatA_100nM.txt","sha1":"cc9bd558ca79b30b2966714da7ef4129537fde0c","sha256":"3a7c07ad17ce3638d5a1dd21f995a496e430b952eef00270ad741d506984370f","size":640500},{"extra":{"mimetype":"text/plain"},"md5":"e45d39263eda5e7763002cf61f708ce4","path":"060111_Ctrl_DMSO.txt","sha1":"3c90a1d86e7a2b11ce4994afe950031dfb99ddf2","sha256":"c1d5a888bce2a12478b2aca1113c0db923fb3a9978858497889b81902165927c","size":1499484},{"extra":{"mimetype":"text/plain"},"md5":"548523f7b4c5170cc220a091bf480e32","path":"052311_CytoB.txt","sha1":"4862246b5f48ac8f446ff65fdffe0a5af5520dc9","sha256":"4203b83eab45d7adbe8f738527bef9ddbc1730ceeeff05dfa4193a442064049c","size":121910},{"extra":{"mimetype":"text/plain"},"md5":"b387e141c84292ec637eb4333287dd1e","path":"062812_CytoB4_8uL.txt","sha1":"ecd5dce5e1214401d6cf09c8df6565818610d75b","sha256":"fa40b428a57cf4a95f68286988c742cfc1e919130d42e5090de3fb6963c3eafb","size":215477},{"extra":{"mimetype":"text/plain"},"md5":"e143909e79f1a7ee70ac411c6e61ef8c","path":"021611_H929.txt","sha1":"135096114b2d993e6729c81a2e2df0909dc999bc","sha256":"b0d409b90c9f9c4e1d9c84b712cd955e37544cb5749e9e3f398b90ee86a760b6","size":173751},{"extra":{"mimetype":"text/plain"},"md5":"7a73dd72af5c59612bb2d3a5450aedee","path":"062912_LatA200nM.txt","sha1":"7211121b8f8fc7ba76c55c35cc5d7e64c554914e","sha256":"ef2ed92a5a5c21816d713b2bdbcc2a406a39d2ea8f8dde961f4a976dc116d1f8","size":578291},{"extra":{"mimetype":"text/plain"},"md5":"f3eeac4f72e71b6e58dff8c39d92220b","path":"022212_DMSO.txt","sha1":"ede26cbc8d9ebc881277f81c962c212c09b1680f","sha256":"3b5b613ae6c0a06b0c013e3f439a3fd709677c30758516661fcf8134880a7199","size":1748533},{"extra":{"mimetype":"text/plain"},"md5":"b9feaaed607da9054b8aa7ec949a821d","path":"062012_LatA50nM.txt","sha1":"45ed08cf4734c44146dd900785a7a9ba8bcf72d9","sha256":"39522709b157d1e479cd102e53221a367488c9f8535c4ce85aabbf8dc457b70b","size":1320060},{"extra":{"mimetype":"text/plain"},"md5":"a3c3cf340773ac2d16e946a7c10cfddb","path":"070612_DMSO.txt","sha1":"4296e1cd6ef8e32aa7224eac8377f47ca7d645c1","sha256":"700966fc77dddf7438863ed118d64ed31ffe57b239781bb8b9594e9136d2c91f","size":1565988},{"extra":{"mimetype":"text/plain"},"md5":"fdc8c5c7dced7b38752d5dd44a51e8e8","path":"030712_Ctrl.txt","sha1":"98e1c3f6af26ad4cf0d1ab6b43ac1b4aa779cef9","sha256":"7b0c8bcfaf0df17f206c977aaf7950b26d99480579a56bc53f447b3d7a630e7b","size":1326229},{"extra":{"mimetype":"text/plain"},"md5":"408220ddeef9a5741354ee544bf0b348","path":"022012_Taxol.txt","sha1":"3bb86d180ebf2b7179b38d90094cbc7bea7406f7","sha256":"d10e473da5557296df0954bf198678661e64b3656f3920e93127ad1d31684713","size":1635260},{"extra":{"mimetype":"text/plain"},"md5":"80a782103b95a22beb76cbb1f577aa68","path":"021912_DMSO.txt","sha1":"a79f45942044684a768e8bfda0c8e5f4c659882e","sha256":"23ba99985e98e2d87eda793e4e0c637716844c91051f217b0964cd8b7cc7345a","size":1082779},{"extra":{"mimetype":"text/plain"},"md5":"1c1f27ff119969d809dbeef3d47656af","path":"021812_LatA.txt","sha1":"f070f9265add073d052af20021b96ed8ef1ab57b","sha256":"cda3a1ff0d94a61577a267205797a8e4f5432b0cc586b91f2fd251b7019b16b3","size":1229189},{"extra":{"mimetype":"text/plain"},"md5":"1d7dfd73ae5fe71d2548746181de5758","path":"061611_CytoB.txt","sha1":"9e277c91d99f064566b3df67c2453d2c3d85b77e","sha256":"b4740947b9330f5f234eb597f25e917c801ad75106f0361a4bf4c795543636d6","size":548117},{"extra":{"mimetype":"text/plain"},"md5":"04702e0535a62adebd50ccab4ef9b9d3","path":"040312_Ctrl.txt","sha1":"e9becc2ef210540bdd17ed9c42c25193721b69b2","sha256":"2fafb8eb7c61fc1832eb333b733f60d78cb5fdf39af3e3259fe38563029beb76","size":2027114},{"extra":{"mimetype":"text/plain"},"md5":"f5c291b532a534030046b722f68a362b","path":"072712_CH12.txt","sha1":"c90d5ab0f53f288d953ef84ee3433a8eb6a4578a","sha256":"6dd01fcef271facefa8a6db85dd67f0abfc21b59c7a53dc10c0358680b602752","size":625260},{"extra":{"mimetype":"text/plain"},"md5":"5709144abf8d960bd3d0bdbee87d6fb5","path":"030812_Noco.txt","sha1":"3577e12cc4b9432f95492ca6bb2a822e899a17b0","sha256":"8a421a72194eb815410e33b255dcb6763c46edaa19b8b39685cf1ae3b6a29eca","size":50747},{"extra":{"mimetype":"text/plain"},"md5":"e306220f25c5ad0863733a050de546c9","path":"071612_CH12.txt","sha1":"0fac76b0e579540a475f8ad44e14544cf9dd7e05","sha256":"3b2d040ae222f28774d78ef16c033fc5102a8707d385d0b35d6ff537d1763b5c","size":962172},{"extra":{"mimetype":"text/plain"},"md5":"5b72da6e75f1423bdee3c88cf6ae6233","path":"021712_LatA.txt","sha1":"5a6dd2e329716ccdbb7aeb29ef90b6d25111120c","sha256":"00e161b4a6197563fa58a670c6495378705a2b0aace260159a6a63c6ff4a9548","size":1440446},{"extra":{"mimetype":"text/plain"},"md5":"36ce1748c811d4ecc19c67c08533abcb","path":"062411_Bleb_half.txt","sha1":"0e6292cc9f3110063fdc6273986e2e5aa81bad89","sha256":"d02b01ede98936f9d321660089a3538aeb7db55109c6e1930ee8f8839d2aed14","size":836110},{"extra":{"mimetype":"text/plai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diff --git a/python/tests/import_fileset_generic.py b/python/tests/import_fileset_generic.py new file mode 100644 index 00000000..44310304 --- /dev/null +++ b/python/tests/import_fileset_generic.py @@ -0,0 +1,59 @@ + +import json +import pytest + +from fatcat_tools.importers import FilesetImporter, JsonLinePusher +from fixtures import * + + +@pytest.fixture(scope="function") +def fileset_importer(api): + yield FilesetImporter(api) + +# TODO: use API to check that entities actually created... +def test_fileset_importer_basic(fileset_importer): + with open('tests/files/fileset_ltjp7k2nrbes3or5h4na5qgxlu.json', 'r') as f: + JsonLinePusher(fileset_importer, f).run() + +def test_fileset_importer(fileset_importer): + last_index = fileset_importer.api.get_changelog(limit=1)[0].index + with open('tests/files/fileset_ltjp7k2nrbes3or5h4na5qgxlu.json', 'r') as f: + fileset_importer.bezerk_mode = True + counts = JsonLinePusher(fileset_importer, f).run() + assert counts['insert'] == 1 + assert counts['exists'] == 0 + assert counts['skip'] == 0 + + # fetch most recent editgroup + change = fileset_importer.api.get_changelog_entry(index=last_index+1) + eg = change.editgroup + assert eg.description + assert "generic fileset" in eg.description.lower() + assert eg.extra['git_rev'] + assert "fatcat_tools.FilesetImporter" in eg.extra['agent'] + + # re-insert; should skip + with open('tests/files/fileset_ltjp7k2nrbes3or5h4na5qgxlu.json', 'r') as f: + fileset_importer.reset() + fileset_importer.bezerk_mode = False + counts = JsonLinePusher(fileset_importer, f).run() + assert counts['insert'] == 0 + assert counts['exists'] == 1 + assert counts['skip'] == 0 + +def test_fileset_dict_parse(fileset_importer): + with open('tests/files/fileset_ltjp7k2nrbes3or5h4na5qgxlu.json', 'r') as f: + raw = json.loads(f.readline()) + fs = fileset_importer.parse_record(raw) + + assert fs.manifest[0].sha1 == "cc9bd558ca79b30b2966714da7ef4129537fde0c" + assert fs.manifest[0].md5 == "742c40404c9a4dbbd77c0985201c639f" + assert fs.manifest[0].sha256 == "3a7c07ad17ce3638d5a1dd21f995a496e430b952eef00270ad741d506984370f" + assert fs.manifest[0].size == 640500 + assert fs.manifest[0].path == "070111_LatA_100nM.txt" + assert fs.manifest[0].extra['mimetype'] == "text/plain" + assert len(fs.urls) == 3 + for u in fs.urls: + if u.rel == "repo": + assert u.url == "https://merritt.cdlib.org/d/ark%3A%2Fb5068%2Fd1rp49/1/" + assert len(fs.release_ids) == 1 |