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authorBryan Newbold <bnewbold@robocracy.org>2019-05-15 17:11:52 -0700
committerBryan Newbold <bnewbold@robocracy.org>2019-05-21 11:41:29 -0700
commit91879651d7aa8a18a5fbd2b57dd60c171d6c8fba (patch)
treedf8d1fd330e41de9e0c9b0a7dcfa97a7dbe6cf02 /python/tests
parent1b592132fe1a127368189e07bdbf9a16a807a284 (diff)
downloadfatcat-91879651d7aa8a18a5fbd2b57dd60c171d6c8fba.tar.gz
fatcat-91879651d7aa8a18a5fbd2b57dd60c171d6c8fba.zip
initial arxivraw importer (from parser)
Diffstat (limited to 'python/tests')
-rw-r--r--python/tests/import_arxiv.py96
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diff --git a/python/tests/import_arxiv.py b/python/tests/import_arxiv.py
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+++ b/python/tests/import_arxiv.py
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+
+import json, gzip
+import pytest
+from fatcat_tools.importers import ArxivRawImporter, Bs4XmlFilePusher
+from fixtures import api
+from bs4 import BeautifulSoup
+
+
+@pytest.fixture(scope="function")
+def arxiv_importer(api):
+ ari = ArxivRawImporter(api, bezerk_mode=True)
+ ari._test_override = True
+ return ari
+
+def test_arxiv_importer(arxiv_importer):
+ last_index = arxiv_importer.api.get_changelog(limit=1)[0].index
+ with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
+ arxiv_importer.bezerk_mode = True
+ counts = Bs4XmlFilePusher(arxiv_importer, f, "record").run()
+ assert counts['insert'] == 2
+ assert counts['exists'] == 0
+ assert counts['skip'] == 0
+
+ # fetch most recent editgroup
+ change = arxiv_importer.api.get_changelog_entry(index=last_index+1)
+ eg = change.editgroup
+ assert eg.description
+ assert "arxiv" in eg.description.lower()
+ assert eg.extra['git_rev']
+ assert "fatcat_tools.ArxivRawImporter" in eg.extra['agent']
+
+ last_index = arxiv_importer.api.get_changelog(limit=1)[0].index
+ with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
+ arxiv_importer.bezerk_mode = False
+ arxiv_importer.reset()
+ counts = Bs4XmlFilePusher(arxiv_importer, f, "record").run()
+ assert counts['insert'] == 0
+ assert counts['exists'] == 2
+ assert counts['skip'] == 0
+ assert last_index == arxiv_importer.api.get_changelog(limit=1)[0].index
+
+def test_arxiv_xml_parse(arxiv_importer):
+ with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
+ soup = BeautifulSoup(f, "xml")
+ r = arxiv_importer.parse_record(soup.find_all("record")[0])
+
+ r1 = r[0]
+ r2 = r[1]
+ print(r1.extra)
+ print(r2.extra)
+ assert r1.work_id == r2.work_id
+ assert r1.title == "Martingale theory for housekeeping heat"
+ assert r1.subtitle == None
+ assert r1.original_title == None
+ assert r1.release_type == "article-journal"
+ assert r1.release_stage == "submitted"
+ assert r2.release_stage == "published"
+ assert r1.license_slug == "ARXIV-NED-1.0"
+ assert r1.version == "v1"
+ assert r2.version == "v2"
+ assert r1.ext_ids.arxiv == "1810.09584v1"
+ assert r2.ext_ids.arxiv == "1810.09584v2"
+ assert r1.ext_ids.doi == None
+ assert r2.ext_ids.doi == "10.1209/0295-5075/124/60006"
+ assert r1.release_year == 2018
+ assert str(r1.release_date) == "2018-10-22"
+ assert r2.release_year == 2019
+ assert str(r2.release_date) == "2019-01-13"
+ # matched by ISSN, so shouldn't be in there?
+ #assert extra['container_name'] == "Abstracts of the Papers Communicated to the Royal Society of London"
+ assert len(r1.contribs) == 4
+ # XXX: extra['arxiv'] stuff
+
+ assert r1.contribs[0].raw_name == "Raphael Chetrite"
+ assert r1.contribs[0].role == "author"
+ assert r1.contribs[1].raw_name == "Shamik Gupta"
+ assert r1.contribs[2].raw_name == "Izaak Neri"
+ assert r1.contribs[3].raw_name == "Édgar Roldán"
+ assert r1.contribs[3].role == "author"
+
+ assert len(r1.contribs) == 4
+ assert r1.contribs == r2.contribs
+
+ assert r1.abstracts[0].content.startswith("The housekeeping heat is the energy exchanged")
+ # order isn't deterministic
+ assert "application/x-latex" in [a.mimetype for a in r1.abstracts]
+ assert "text/plain" in [a.mimetype for a in r1.abstracts]
+
+ assert r1.abstracts == r2.abstracts
+
+ assert r1.extra['arxiv']['comments'] == "7 pages, 2 figures"
+ assert r1.extra['arxiv']['categories'] == ["cond-mat.stat-mech", "physics.bio-ph", "physics.data-an"]
+
+ assert r1.extra == r2.extra
+
+ assert not r1.refs