From 91879651d7aa8a18a5fbd2b57dd60c171d6c8fba Mon Sep 17 00:00:00 2001
From: Bryan Newbold <bnewbold@robocracy.org>
Date: Wed, 15 May 2019 17:11:52 -0700
Subject: initial arxivraw importer (from parser)

---
 python/tests/import_arxiv.py | 96 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 96 insertions(+)
 create mode 100644 python/tests/import_arxiv.py

(limited to 'python/tests')

diff --git a/python/tests/import_arxiv.py b/python/tests/import_arxiv.py
new file mode 100644
index 00000000..726bafc5
--- /dev/null
+++ b/python/tests/import_arxiv.py
@@ -0,0 +1,96 @@
+
+import json, gzip
+import pytest
+from fatcat_tools.importers import ArxivRawImporter, Bs4XmlFilePusher
+from fixtures import api
+from bs4 import BeautifulSoup
+
+
+@pytest.fixture(scope="function")
+def arxiv_importer(api):
+    ari = ArxivRawImporter(api, bezerk_mode=True)
+    ari._test_override = True
+    return ari
+
+def test_arxiv_importer(arxiv_importer):
+    last_index = arxiv_importer.api.get_changelog(limit=1)[0].index
+    with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
+        arxiv_importer.bezerk_mode = True
+        counts = Bs4XmlFilePusher(arxiv_importer, f, "record").run()
+    assert counts['insert'] == 2
+    assert counts['exists'] == 0
+    assert counts['skip'] == 0
+
+    # fetch most recent editgroup
+    change = arxiv_importer.api.get_changelog_entry(index=last_index+1)
+    eg = change.editgroup
+    assert eg.description
+    assert "arxiv" in eg.description.lower()
+    assert eg.extra['git_rev']
+    assert "fatcat_tools.ArxivRawImporter" in eg.extra['agent']
+
+    last_index = arxiv_importer.api.get_changelog(limit=1)[0].index
+    with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
+        arxiv_importer.bezerk_mode = False
+        arxiv_importer.reset()
+        counts = Bs4XmlFilePusher(arxiv_importer, f, "record").run()
+    assert counts['insert'] == 0
+    assert counts['exists'] == 2
+    assert counts['skip'] == 0
+    assert last_index == arxiv_importer.api.get_changelog(limit=1)[0].index
+
+def test_arxiv_xml_parse(arxiv_importer):
+    with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
+        soup = BeautifulSoup(f, "xml")
+        r = arxiv_importer.parse_record(soup.find_all("record")[0])
+
+    r1 = r[0]
+    r2 = r[1]
+    print(r1.extra)
+    print(r2.extra)
+    assert r1.work_id == r2.work_id
+    assert r1.title == "Martingale theory for housekeeping heat"
+    assert r1.subtitle == None
+    assert r1.original_title == None
+    assert r1.release_type == "article-journal"
+    assert r1.release_stage == "submitted"
+    assert r2.release_stage == "published"
+    assert r1.license_slug == "ARXIV-NED-1.0"
+    assert r1.version == "v1"
+    assert r2.version == "v2"
+    assert r1.ext_ids.arxiv == "1810.09584v1"
+    assert r2.ext_ids.arxiv == "1810.09584v2"
+    assert r1.ext_ids.doi == None
+    assert r2.ext_ids.doi == "10.1209/0295-5075/124/60006"
+    assert r1.release_year == 2018
+    assert str(r1.release_date) == "2018-10-22"
+    assert r2.release_year == 2019
+    assert str(r2.release_date) == "2019-01-13"
+    # matched by ISSN, so shouldn't be in there?
+    #assert extra['container_name'] == "Abstracts of the Papers Communicated to the Royal Society of London"
+    assert len(r1.contribs) == 4
+    # XXX: extra['arxiv'] stuff
+
+    assert r1.contribs[0].raw_name == "Raphael Chetrite"
+    assert r1.contribs[0].role == "author"
+    assert r1.contribs[1].raw_name == "Shamik Gupta"
+    assert r1.contribs[2].raw_name == "Izaak Neri"
+    assert r1.contribs[3].raw_name == "Édgar Roldán"
+    assert r1.contribs[3].role == "author"
+
+    assert len(r1.contribs) == 4
+    assert r1.contribs == r2.contribs
+
+    assert r1.abstracts[0].content.startswith("The housekeeping heat is the energy exchanged")
+    # order isn't deterministic
+    assert "application/x-latex" in [a.mimetype for a in r1.abstracts]
+    assert "text/plain" in [a.mimetype for a in r1.abstracts]
+
+    assert r1.abstracts == r2.abstracts
+
+    assert r1.extra['arxiv']['comments'] == "7 pages, 2 figures"
+    assert r1.extra['arxiv']['categories'] == ["cond-mat.stat-mech", "physics.bio-ph", "physics.data-an"]
+
+    assert r1.extra == r2.extra
+
+    assert not r1.refs
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