Merge branch 'bnewbold-doaj-metadata' into 'master'

DOAJ article metadata import

See merge request webgroup/fatcat!89

1 files changed, 142 insertions, 0 deletions

diff --git a/python/tests/import_doaj.py b/python/tests/import_doaj.py
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+++ b/python/tests/import_doaj.py
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+
+import json
+import datetime
+
+import pytest
+import fatcat_openapi_client
+
+from fatcat_tools.importers import DoajArticleImporter, JsonLinePusher
+from fatcat_tools.transforms import entity_to_dict
+from fixtures import *
+
+
+@pytest.fixture(scope="function")
+def doaj_importer(api):
+    with open("tests/files/ISSN-to-ISSN-L.snip.txt", "r") as issn_file:
+        yield DoajArticleImporter(api, issn_file, bezerk_mode=True)
+
+def test_doaj_importer(doaj_importer):
+    last_index = doaj_importer.api.get_changelog(limit=1)[0].index
+    with open("tests/files/example_doaj_articles.json", "r") as f:
+        doaj_importer.bezerk_mode = True
+        counts = JsonLinePusher(doaj_importer, f).run()
+    assert counts["insert"] == 5
+    assert counts["exists"] == 0
+    assert counts["skip"] == 0
+    success_changelog = doaj_importer.api.get_changelog(limit=1)[0]
+    assert last_index + 1 == success_changelog.index
+
+    # fetch most recent editgroup
+    change = doaj_importer.api.get_changelog_entry(index=last_index + 1)
+    eg = change.editgroup
+    assert eg.description
+    assert "doaj" in eg.description.lower()
+    assert eg.extra["git_rev"]
+    assert "fatcat_tools.DoajArticleImporter" in eg.extra["agent"]
+
+    last_index = doaj_importer.api.get_changelog(limit=1)[0].index
+    with open("tests/files/example_doaj_articles.json", "r") as f:
+        doaj_importer.bezerk_mode = False
+        doaj_importer.reset()
+        counts = JsonLinePusher(doaj_importer, f).run()
+    assert counts["insert"] == 0
+    assert counts["exists"] == 5
+    assert counts["skip"] == 0
+    assert last_index == doaj_importer.api.get_changelog(limit=1)[0].index
+
+    # cleanup file entities (so other import tests work)
+    success_editgroup = doaj_importer.api.get_editgroup(success_changelog.editgroup_id)
+    eg = quick_eg(doaj_importer.api)
+    for release_edit in success_editgroup.edits.releases:
+        doaj_importer.api.delete_release(eg.editgroup_id, release_edit.ident)
+    doaj_importer.api.accept_editgroup(eg.editgroup_id)
+
+def test_doaj_importer_existing_doi(doaj_importer):
+    """
+    One of the DOAJ test entities has a dummy DOI (10.123/abc); this test
+    ensures that it isn't clobbered, an then that it gets updated.
+    """
+    with open("tests/files/example_doaj_articles.json", "r") as f:
+        doaj_importer.reset()
+        doaj_importer.bezerk_mode = False
+        doaj_importer.do_updates = False
+        counts = JsonLinePusher(doaj_importer, f).run()
+    print(counts)
+    assert counts["insert"] == 4
+    assert counts["exists"] == 1
+    assert counts["skip"] == 0
+    success_changelog = doaj_importer.api.get_changelog(limit=1)[0]
+    success_editgroup = doaj_importer.api.get_editgroup(success_changelog.editgroup_id)
+
+    with open("tests/files/example_doaj_articles.json", "r") as f:
+        doaj_importer.reset()
+        doaj_importer.bezerk_mode = False
+        doaj_importer.do_updates = True
+        counts = JsonLinePusher(doaj_importer, f).run()
+    print(counts)
+    assert counts["insert"] == 0
+    assert counts["exists"] == 4
+    assert counts["update"] == 1
+    update_changelog = doaj_importer.api.get_changelog(limit=1)[0]
+    update_editgroup = doaj_importer.api.get_editgroup(update_changelog.editgroup_id)
+
+    with open("tests/files/example_doaj_articles.json", "r") as f:
+        doaj_importer.reset()
+        doaj_importer.bezerk_mode = False
+        doaj_importer.do_updates = True
+        counts = JsonLinePusher(doaj_importer, f).run()
+    print(counts)
+    assert counts["insert"] == 0
+    assert counts["exists"] == 5
+    assert counts["update"] == 0
+
+    # cleanup file entities (so other import tests work)
+    eg = quick_eg(doaj_importer.api)
+    for release_edit in success_editgroup.edits.releases:
+        doaj_importer.api.delete_release(eg.editgroup_id, release_edit.ident)
+    for release_edit in update_editgroup.edits.releases:
+        print(release_edit)
+        doaj_importer.api.update_release(
+            eg.editgroup_id,
+            release_edit.ident,
+            ReleaseEntity(
+                revision=release_edit.prev_revision,
+                ext_ids=ReleaseExtIds(),
+            ),
+        )
+    doaj_importer.api.accept_editgroup(eg.editgroup_id)
+
+def test_doaj_dict_parse(doaj_importer):
+    with open("tests/files/example_doaj_articles.json", "r") as f:
+        raw = json.loads(f.readline())
+        r = doaj_importer.parse_record(raw)
+
+        assert r.title == "Effect of hydrogen on tensile properties and fracture behavior of PH 13-8 Mo steel"
+        assert r.publisher == "Elsevier"
+        assert r.release_type == "article-journal"
+        assert r.release_stage == "published"
+        assert r.license_slug == "cc-by-nc-nd"
+        assert r.original_title == None
+        assert r.ext_ids.doi == "10.1016/j.matdes.2016.06.110"
+        assert r.ext_ids.doaj == "e58f08a11ecb495ead55a44ad4f89808"
+        assert r.subtitle == None
+        assert r.release_date == None
+        assert r.release_year == 2016
+        assert r.volume == "108"
+        assert r.number == None
+        assert r.pages == "608-617"
+        assert r.version == None
+        assert r.language == "en"
+        # matched by ISSN, so wouldn't be defined normally
+        assert r.extra['container_name'] == "Materials & Design"
+        assert len(r.abstracts) == 1
+        assert len(r.abstracts[0].content) == 1033
+        assert len(r.contribs) == 5
+        assert r.contribs[0].raw_name == "Xinfeng Li"
+        assert r.contribs[0].given_name == None
+        assert r.contribs[0].surname == None
+        assert not r.refs
+
+        #print(r.extra)
+        assert r.extra['release_month'] == 10
+        assert r.extra['country'] == 'gb'