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authorBryan Newbold <bnewbold@robocracy.org>2021-11-10 13:23:12 -0800
committerBryan Newbold <bnewbold@robocracy.org>2021-11-10 13:28:28 -0800
commit16e9979a6f347b49764c1141209e84083ea81057 (patch)
treeccc3d35607cadac4933e9b28366bedf5a605c122 /python/fatcat_tools/importers/pubmed.py
parentab4e1355bf93e3755985f1b5cd2589a78601d253 (diff)
downloadfatcat-16e9979a6f347b49764c1141209e84083ea81057.tar.gz
fatcat-16e9979a6f347b49764c1141209e84083ea81057.zip
importers: refactor imports of clean() and other normalization helpers
Diffstat (limited to 'python/fatcat_tools/importers/pubmed.py')
-rw-r--r--python/fatcat_tools/importers/pubmed.py15
1 files changed, 11 insertions, 4 deletions
diff --git a/python/fatcat_tools/importers/pubmed.py b/python/fatcat_tools/importers/pubmed.py
index d32fcefa..3274234f 100644
--- a/python/fatcat_tools/importers/pubmed.py
+++ b/python/fatcat_tools/importers/pubmed.py
@@ -8,9 +8,16 @@ import fatcat_openapi_client
from bs4 import BeautifulSoup
from fatcat_openapi_client import ApiClient, ReleaseEntity
-from fatcat_tools.normal import clean_doi, clean_issn, clean_pmcid, clean_pmid
+from fatcat_tools.normal import (
+ LANG_MAP_MARC,
+ clean_doi,
+ clean_issn,
+ clean_pmcid,
+ clean_pmid,
+ clean_str,
+)
-from .common import LANG_MAP_MARC, EntityImporter, clean
+from .common import EntityImporter
# from: https://www.ncbi.nlm.nih.gov/books/NBK3827/table/pubmedhelp.T.publication_types/?report=objectonly
PUBMED_RELEASE_TYPE_MAP = {
@@ -704,14 +711,14 @@ class PubmedImporter(EntityImporter):
if extra_pubmed:
extra["pubmed"] = extra_pubmed
- title = clean(title)
+ title = clean_str(title)
if not title:
return None
re = fatcat_openapi_client.ReleaseEntity(
work_id=None,
title=title,
- original_title=clean(original_title),
+ original_title=clean_str(original_title),
release_type=release_type,
release_stage=release_stage,
release_date=release_date,