aboutsummaryrefslogtreecommitdiffstats
path: root/extra/bulk_edits/2022-07-19_doaj.md
diff options
context:
space:
mode:
authorBryan Newbold <bnewbold@robocracy.org>2022-07-20 18:12:56 -0700
committerBryan Newbold <bnewbold@robocracy.org>2022-07-20 18:12:56 -0700
commit35b19455b8014a513a9c31ca5795b2611bad06ce (patch)
treef1d974288b759054cda6ef39668ead543dfbe6d3 /extra/bulk_edits/2022-07-19_doaj.md
parent582495f66e5e08b6e257360097807711e53008d4 (diff)
downloadfatcat-35b19455b8014a513a9c31ca5795b2611bad06ce.tar.gz
fatcat-35b19455b8014a513a9c31ca5795b2611bad06ce.zip
bulk edit/import notes
Diffstat (limited to 'extra/bulk_edits/2022-07-19_doaj.md')
-rw-r--r--extra/bulk_edits/2022-07-19_doaj.md78
1 files changed, 78 insertions, 0 deletions
diff --git a/extra/bulk_edits/2022-07-19_doaj.md b/extra/bulk_edits/2022-07-19_doaj.md
new file mode 100644
index 00000000..d25f2dda
--- /dev/null
+++ b/extra/bulk_edits/2022-07-19_doaj.md
@@ -0,0 +1,78 @@
+
+Doing a batch import of DOAJ articles. Will need to do another one of these
+soon after setting up daily (OAI-PMH feed) ingest.
+
+## Prep
+
+ wget https://doaj.org/csv
+ wget https://doaj.org/public-data-dump/journal
+ wget https://doaj.org/public-data-dump/article
+
+ mv csv journalcsv__doaj_20220719_2135_utf8.csv
+ mv journal doaj_journal_data_2022-07-19.tar.gz
+ mv article doaj_article_data_2022-07-19.tar.gz
+
+ ia upload doaj_data_2022-07-19 -m collection:ia_biblio_metadata ../logo_cropped.jpg journalcsv__doaj_20220719_2135_utf8.csv doaj_journal_data_2022-07-19.tar.gz doaj_article_data_2022-07-19.tar.gz
+
+ tar xvf doaj_journal_data_2022-07-19.tar.gz
+ cat doaj_journal_data_*/journal_batch_*.json | jq .[] -c | pv -l | gzip > doaj_journal_data_2022-07-19_all.json.gz
+
+ tar xvf doaj_article_data_2022-07-19.tar.gz
+ cat doaj_article_data_*/article_batch*.json | jq .[] -c | pv -l | gzip > doaj_article_data_2022-07-19_all.json.gz
+
+ ia upload doaj_data_2022-07-19 doaj_journal_data_2022-07-19_all.json.gz doaj_article_data_2022-07-19_all.json.gz
+
+On fatcat machine:
+
+ cd /srv/fatcat/datasets
+ wget https://archive.org/download/doaj_data_2022-07-19/doaj_article_data_2022-07-19_all.json.gz
+
+## Prod Article Import
+
+ git rev: 582495f66e5e08b6e257360097807711e53008d4
+ (includes DOAJ container-id required patch)
+
+ date: Tue Jul 19 22:46:42 UTC 2022
+
+ `doaj_id:*`: 1,335,195 hits
+
+Start with sample:
+
+ zcat /srv/fatcat/datasets/doaj_article_data_2022-07-19_all.json.gz | shuf -n1000 > /srv/fatcat/datasets/doaj_article_data_2022-07-19_sample.json
+
+ export FATCAT_AUTH_WORKER_DOAJ=[...]
+ cat /srv/fatcat/datasets/doaj_article_data_2022-07-19_sample.json | pv -l | ./fatcat_import.py doaj-article --issn-map-file /srv/fatcat/datasets/ISSN-to-ISSN-L.txt -
+ # Counter({'total': 1000, 'exists': 895, 'exists-fuzzy': 93, 'insert': 9, 'skip': 3, 'skip-no-container': 3, 'update': 0})
+
+Pretty few imports.
+
+Full ingest:
+
+ export FATCAT_AUTH_WORKER_DOAJ=[...]
+ zcat /srv/fatcat/datasets/doaj_article_data_2022-07-19_all.json.gz | pv -l | parallel -j6 --round-robin --pipe ./fatcat_import.py doaj-article --issn-map-file /srv/fatcat/datasets/ISSN-to-ISSN-L.txt -
+ # Counter({'total': 1282908, 'exists': 1145439, 'exists-fuzzy': 117120, 'insert': 16357, 'skip': 3831, 'skip-no-container': 2641, 'skip-title': 1190, 'skip-doaj-id-mismatch': 161, 'update': 0})
+
+Times 6x, around 100k releases added.
+
+Got a bunch of:
+
+ /1/srv/fatcat/src/python/fatcat_tools/importers/doaj_article.py:233: UserWarning: unexpected DOAJ ext_id match after lookup failed doaj=fcdb7a7a9729403d8d99a21f6970dd1d ident=wesvmjwihvblzayfmrvvgr4ulm
+ warnings.warn(warn_str)
+ /1/srv/fatcat/src/python/fatcat_tools/importers/doaj_article.py:233: UserWarning: unexpected DOAJ ext_id match after lookup failed doaj=1455dfe24583480883dbbb293a4bc0c6 ident=lfw57esesjbotms3grvvods5dq
+ warnings.warn(warn_str)
+ /1/srv/fatcat/src/python/fatcat_tools/importers/doaj_article.py:233: UserWarning: unexpected DOAJ ext_id match after lookup failed doaj=88fa65a33c8e484091fc76f4cda59c25 ident=22abqt5qe5e7ngjd5fkyvzyc4q
+ warnings.warn(warn_str)
+ /1/srv/fatcat/src/python/fatcat_tools/importers/doaj_article.py:233: UserWarning: unexpected DOAJ ext_id match after lookup failed doaj=eb7b03dc3dc340cea36891a68a50cce7 ident=ljedohlfyzdkxebgpcswjtd77q
+ warnings.warn(warn_str)
+ /1/srv/fatcat/src/python/fatcat_tools/importers/doaj_article.py:233: UserWarning: unexpected DOAJ ext_id match after lookup failed doaj=519617147ce248ea88d45ab098342153 ident=a63bqkttrbhyxavfr7li2w2xf4
+
+Should investigate!
+
+Also, noticed that DOAJ importer is hitting `api.fatcat.wiki`, not the public
+API endpoint. Guessing this is via fuzzycat.
+
+1,434,266 results for `doaj_id:*`.
+
+Then did a follow-up sandcrawler ingest, see notes in that repository. Note
+that newer ingest can crawl doaj.org, bypassing the sandcrawler SQL load, but
+the direct crawling is probably still faster.