1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
|
{% macro fulltext_search_result_row(paper) -%}
<div class="ui grid">
<div class="thirteen wide column">
{# ### TITLE ROW #}
<div style="margin-bottom: 0.1em; font-size: 1.2em; font-weight: bold;">
{% if paper.doc_type == "work" %}
{# "best URL" calculation #}
{% if paper.biblio.pmcid %}
<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/{{ paper.biblio.pmcid }}/"
{% elif paper.biblio.pmid %}
<a href="https://pubmed.ncbi.nlm.nih.gov/{{ paper.biblio.pmid }}/"
{% elif paper.biblio.arxiv_id %}
<a href="https://arxiv.org/abs/{{ paper.biblio.arxiv_id }}/"
{% elif paper.biblio.doi %}
<a href="https://doi.org/{{ paper.biblio.doi }}"
{% else %}
<a href="https://fatcat.wiki/release/{{ paper.biblio.release_ident }}"
{% endif %}
style="color: #2224c7;">
{% if paper.biblio.title %}
{{ paper.biblio.title[:512] }}
{% if paper.biblio.title|length > 512 %}...{% endif %}
{% else %}
[blank]
{% endif %}
</a>
{# release type suffix #}
<span style="font-weight: normal; text-transform: uppercase; font-weight: bold;">
{% if paper.biblio.release_type in ("article-journal", "paper-conference") or paper.doc_type == "sim_page" %}
{# pass #}
{% elif paper.biblio.release_type in ("book", "chapter", "dataset") %}
[{{ _(paper.biblio.release_type) }}]
{% elif not paper.biblio.release_type %}
<span style="color: red;">[{{ _("media?") }}]</span>
{% else %}
[{{ _(paper.biblio.release_type) }}]
{% endif %}
</span>
{# show inverse of title/original_title above #}
{% if paper.biblio.original_title and paper.biblio.title != paper.biblio.original_title %}
<br>
<i style="font-weight: bold;">
{{ paper.biblio.original_title[:512] }} {% if paper.biblio.original_title|length > 512 %}...{% endif %}
</i>
{% endif %}
{% elif paper.doc_type == "sim_page" %}
<a href="https://archive.org/details/{{ paper.ia_sim.issue_item }}/page/{{ paper.ia_sim.first_page }}" style="color: #2224c7;">Page {{ paper.ia_sim.first_page }}</a> of <a href="https://archive.org/details/{{ paper.ia_sim.issue_item }}" style="color: #2224c7;">{{ paper.biblio.container_name }}</a> (<a href="https://archive.org/details/{{ paper.ia_sim.issue_item }}" style="color: #2224c7;">Vol. {{ paper.biblio.volume }}, Issue {{ paper.biblio.issue }}</a>)
{% endif %}
</div>
{# ### AUTHOR ROW #}
{% if paper.biblio.contrib_names %}
<div style="margin-top: 0.1em; margin-bottom: 0.2em; font-size: 1.1em;">
{{ ", ".join(paper.biblio.contrib_names[:12]) }}
{% if paper.biblio.contrib_names|length > 12 %}<i>(+{{ paper.biblio.contrib_names|length - 12 }} others)</i>{% endif %}
</div>
{% endif %}
{# ### JOURNAL ROW #}
{% if paper.biblio.release_year %}
{{ paper.biblio.release_year }}
{% endif %}
{% if paper.biblio.release_year and paper.biblio.container_name %}
{% endif %}
{% if paper.biblio.container_name %}
<i>
{% if paper.biblio.container_id %}
<a href="https://fatcat.wiki/container/{{ paper.biblio.container_id }}" style="color: black;">{{ paper.biblio.container_name }}</a>
{% elif paper.doc_type == "sim_page" %}
<a href="https://archive.org/details/{{ paper.ia_sim.pub_collection }}" style="color: black;">{{ paper.biblio.container_name }}</a>
{% else %}
{{ paper.biblio.container_name }}
{% endif %}
</i>
{% if paper.container_is_oa %}<i class="icon unlock orange small"></i>{% endif %}
{% endif %}
{% if paper.biblio.withdrawn_status %}
<b style="color: red;"><code>[{{ paper.biblio.withdrawn_status }}]</code></b>
{% endif %}
{% if paper.biblio.release_stage == "accepted" %}
<b style="color: brown;"><code>[{{ paper.biblio.release_stage }}]</code></b>
{% elif paper.biblio.release_stage and paper.biblio.release_stage != "published" %}
<b style="color: red;"><code>[{{ paper.biblio.release_stage }}]</code></b>
{% elif not paper.biblio.release_stage %}
<b style="color: red;"><code>[{{ _("unpublished?") }}]</code></b>
{% endif %}
{# ### ABSTRACT / QUERY HIGHLIGHT #}
{% if paper._highlights %}
<div style="padding-top: 1em; padding-bottom: 0.5em;" class="search_highlights">
{% for highlight in paper._highlights %}
{{ highlight|safe }} ...
{% endfor %}
</div>
{% elif paper.abstracts %}
<div style="padding-top: 1em; padding-bottom: 0.5em;">
{% if paper.abstracts[0].body|length > 500 %}
{{ paper.abstracts[0].body[:500] }}...
{% else %}
{{ paper.abstracts[0].body }}
{% endif %}
</div>
{% else %}
<br>
{% endif %}
{# ### IDENTIFIERS #}
{% if paper.biblio.doi %}
<a href="https://doi.org/{{paper.biblio.doi }}" style="color: green;">doi:{{ paper.biblio.doi }}</a>
{% endif %}
{% if paper.biblio.pmid %}
<a href="https://www.ncbi.nlm.nih.gov/pubmed/{{paper.biblio.pmid }}" style="color: green;">pmid:{{ paper.biblio.pmid }}</a>
{% endif %}
{% if paper.biblio.pmcid %}
<a href="https://pubmed.ncbi.nlm.nih.gov/{{paper.biblio.pmcid }}/" style="color: green;">pmcid:{{ paper.biblio.pmcid }}</a>
{% endif %}
{% if paper.biblio.arxiv_id %}
<a href="https://arxiv.org/abs/{{paper.biblio.arxiv_id }}" style="color: green;">arXiv:{{ paper.biblio.arxiv_id }}</a>
{% endif %}
{% if paper.biblio.release_ident %}
<a href="https://fatcat.wiki/release/{{paper.biblio.release_ident}}" style="color: green;">fatcat:{{ paper.biblio.release_ident}}</a>
{% endif %}
{# ### SOURCE TAGS #}
<div style="margin-top: 0.2em;">
{# colors to use: olive, brown, grey, pink, red, etc #}
{% for tag in paper.tags %}
<span class="ui label small">{{ _(tag) }}</span>
{% endfor %}
{# TODO: remove doc for ES 7.x-style lack of type #}
<a href="{{ settings.ELASTICSEARCH_BACKEND }}/_doc/{{ settings.ELASTICSEARCH_FULLTEXT_INDEX }}/{{ paper.key }}">
<span class="ui label small">indexed</span>
</a>
</div>
</div>
<div class="three wide left aligned column" style="padding-top: 0em; padding-right: 0.5em;">
{% if paper.fulltext.access_url %}
{# <img src="{{ settings.COVID19_FULLTEXT_HOST }}{{ paper.fulltext.thumbnail_url }}" style="border: 1px solid grey; max-height: 12em; max-width: 100%;"> #}
{% if paper.fulltext.thumbnail_url %}
<div class="ui card" style="margin-bottom: 0.2em;">
<a class="image" href="{{ paper.fulltext.access_url}}">
<img src="{{ paper.fulltext.thumbnail_url }}">
</a>
</div>
{% endif %}
<a href="{{ paper.fulltext.access_url}}">
<div style="width: 100%; opacity: 0.65; text-align: center;">
{# TODO: could have other hover info, like mimetype icon and file size? #}
<span>
{% if paper.fulltext.access_type == "wayback" %}
web.archive.org
{% elif paper.fulltext.access_type in ["ia_sim", "ia_file"] %}
archive.org
{% endif %}
{% if paper.fulltext.file_mimetype == "application/pdf" %}
<i class="file pdf outline icon"></i>
{% elif paper.fulltext.access_type == "ia_sim" %}
<i class="film icon"></i>
{% endif %}
</span>
</div>
</a>
{% else %}
{# No Fulltext #}
{% endif %}
</div>
</div>
{% endmacro %}
{% macro query_option(options, selected) -%}
<span style="color: rgba(0,0,0,0.4);">{{ _(options.label) }}</span>
<div class="ui link list" style="margin-top: 0.3em;">
{% if selected %}
<input form="search_form" type="hidden" name="{{ options.slug }}" value="{{ selected }}">
{% endif %}
{% for opt in options.list %}
<button class="text-button" form="search_form" type="submit" name="{{ options.slug }}" value="{{ opt.slug }}">
{% if selected == opt.slug or (not selected and opt.slug == options.default) %}
<span style="font-weight: bold;">
{% else %}
<span>
{% endif %}
{{ _(opt.label) }}
</span>
</button>
<br>
</span>
{% endfor %}
</div>
<br>
{% endmacro %}
|
