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| author | Bryan Newbold <bnewbold@archive.org> | 2020-04-01 15:26:12 -0700 |
|---|---|---|
| committer | Bryan Newbold <bnewbold@archive.org> | 2020-04-01 15:26:12 -0700 |
| commit | 7f30c43cd4955d596ebc51a56aea7996b1005e47 (patch) | |
| tree | df510de6ea605333a56e21f91bcf5b952dd1edb0 /notes | |
| parent | 84edf7225bd9454abc598cdde36b14451ad1787d (diff) | |
| download | fatcat-covid19-7f30c43cd4955d596ebc51a56aea7996b1005e47.tar.gz fatcat-covid19-7f30c43cd4955d596ebc51a56aea7996b1005e47.zip | |
update missing notes and commands
Diffstat (limited to 'notes')
| -rw-r--r-- | notes/missing_2020-03-20.md | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/notes/missing_2020-03-20.md b/notes/missing_2020-03-20.md index 2576a8e..4eaaa4e 100644 --- a/notes/missing_2020-03-20.md +++ b/notes/missing_2020-03-20.md @@ -290,11 +290,11 @@ Interesting sites to crawl or translate: cat missing_doi_status.tsv | rg '404$' | cut -f1 > unregistered_doi.tsv - cat missing_doi_status.tsv | rg '302$' | cut -f1 | parallel http --json get "https://api.crossref.org/v1/works/http://dx.doi.org/{}" | jq .message -c | pv -l > missing_doi_crossref.json + cat missing_doi_status.tsv | rg '302$' | cut -f1 | parallel -j1 'http --json get "https://api.crossref.org/v1/works/http://dx.doi.org/{}" mailto==webservices@archive.org' | rg '^\{' | jq .message -c | pv -l > missing_doi_crossref.json mkdir -p pubmed - cat missing_pmcid.tsv | parallel -j1 'http get "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id={}&rettype=pubmed" > pubmed/{}.xml' cat missing_pmid.tsv | parallel -j1 'http get "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id={}&rettype=pubmed" > pubmed/{}.xml' + cat missing_pmcid.tsv | parallel -j1 'http get "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id={}&rettype=pubmed" > pubmed/{}.xml' cat pubmed/*.xml | rg -v '^<\?xml version' | rg -v '^<!DOCTYPE' | rg -v '^<PubmedArticleSet>' | rg -v '^</PubmedArticleSet>' > pubmed_combined.xml |