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Summary of top large broken domains (2021-04-21 "30 day" snapshot):
## acervus.unicamp.br
domain | status | count
---------------------------------------+-------------------------+--------
acervus.unicamp.br | | 1967
acervus.unicamp.br | no-pdf-link | 1853
select * from ingest_file_result where updated >= '2021-03-01' and terminal_url like '%acervus.unicamp.br%' and status = 'no-pdf-link' limit 5;
http://acervus.unicamp.br/index.asp?codigo_sophia=963332
seems like many of these were captures with a blank page? or a redirect to
the homepage?
http://web.archive.org/web/20200129110523/http://acervus.unicamp.br/index.html
messy, going to move on.
## apex.ipk-gatersleben.de
apex.ipk-gatersleben.de | | 1253
apex.ipk-gatersleben.de | no-pdf-link | 1132
select * from ingest_file_result where updated >= '2021-03-01' and terminal_url like '%apex.ipk-gatersleben.de%' and status = 'no-pdf-link' limit 5;
https://doi.org/10.25642/ipk/rescoll/4886
https://apex.ipk-gatersleben.de/apex/f?p=PGRDOI:RESOLVE:::NO:RP:DOI:10.25642/IPK/RESCOLL/7331
seem to be datasets/species, not articles.
prefix: 10.25642/ipk
## crossref.org
apps.crossref.org | | 4693
apps.crossref.org | no-pdf-link | 4075
https://doi.org/10.1515/9781501747045-013
https://apps.crossref.org/coaccess/coaccess.html?doi=10.1515%2F9781501747045-013
Derp, they are doing a dynamic/AJAX thing, so access links are not in the HTML.
## openeditiong
books.openedition.org | | 1784
books.openedition.org | no-pdf-link | 1466
https://doi.org/10.4000/books.pul.34492
https://books.openedition.org/pul/34492
these are not actually OA books (or at least, not all are)
## chemrxiv.org (figshare)
chemrxiv.org | | 857
chemrxiv.org | no-pdf-link | 519
https://doi.org/10.26434/chemrxiv.14411081
https://chemrxiv.org/articles/preprint/Prediction_and_Optimization_of_Ion_Transport_Characteristics_in_Nanoparticle-Based_Electrolytes_Using_Convolutional_Neural_Networks/14411081
these all seem to be *multi-file* entities, thus not good for single file ingest pipeline.
## direct.mit.edu
direct.mit.edu | | 996
direct.mit.edu | no-pdf-link | 869
https://doi.org/10.7551/mitpress/14056.003.0004
https://direct.mit.edu/books/monograph/5111/chapter-abstract/3060134/Adding-Technology-to-Contact-Tracing?redirectedFrom=fulltext
"not available"
https://doi.org/10.7551/mitpress/12444.003.0004
"not available"
## dlc.library.columbia.edu
dlc.library.columbia.edu | | 4225
dlc.library.columbia.edu | no-pdf-link | 2395
dlc.library.columbia.edu | spn2-wayback-error | 1568
https://doi.org/10.7916/d8-506w-kk49
https://dlc.library.columbia.edu/durst/cul:18931zcrk9
document repository.
this one goes to IA! actually many seem to.
added extractor, should re-ingest with:
publisher:"Columbia University" doi_prefix:10.7916 !journal:*
actually, that is like 600k+ results and many are not digitized, so perhaps not.
## doi.ala.org.au
doi.ala.org.au | | 2570
doi.ala.org.au | no-pdf-link | 2153
https://doi.org/10.26197/ala.811d55e3-2ff4-4501-b3e7-e19249507052
https://doi.ala.org.au/doi/811d55e3-2ff4-4501-b3e7-e19249507052
this is a data repository, with filesets, not papers. datacite metadata is
incorrect.
## fldeploc.dep.state.fl.us
fldeploc.dep.state.fl.us | | 774
fldeploc.dep.state.fl.us | no-pdf-link | 718
https://doi.org/10.35256/ic29
http://fldeploc.dep.state.fl.us/geodb_query/fgs_doi.asp?searchCode=IC29
re-ingest with:
# only ~800 works
doi_prefix:10.35256 publisher:Florida
## geoscan.nrcan.gc.ca
geoscan.nrcan.gc.ca | | 2056
geoscan.nrcan.gc.ca | no-pdf-link | 2019
https://doi.org/10.4095/295366
https://geoscan.nrcan.gc.ca/starweb/geoscan/servlet.starweb?path=geoscan/fulle.web&search1=R=295366
this is a geographic repository, not papers.
## kiss.kstudy.com
kiss.kstudy.com | | 747
kiss.kstudy.com | no-pdf-link | 686
https://doi.org/10.22143/hss21.12.1.121
http://kiss.kstudy.com/thesis/thesis-view.asp?key=3862523
Korean. seems to not actually be theses? can't download.
## linkinghub.elsevier.com
linkinghub.elsevier.com | | 5079
linkinghub.elsevier.com | forbidden | 2226
linkinghub.elsevier.com | spn2-wayback-error | 1625
linkinghub.elsevier.com | spn2-cdx-lookup-failure | 758
skipping for now, looks like mostly 'forbidden'?
## osf.io
These are important!
osf.io | | 3139
osf.io | not-found | 2288
osf.io | spn2-wayback-error | 582
https://doi.org/10.31219/osf.io/jux3w
https://accounts.osf.io/login?service=https://osf.io/jux3w/download
many of these are 404s by browser as well. what does that mean?
## peerj.com
peerj.com | | 785
peerj.com | no-pdf-link | 552
https://doi.org/10.7287/peerj.11155v0.1/reviews/2
https://peerj.com/articles/11155/reviews/
these are HTML reviews, not papers
## preprints.jmir.org
preprints.jmir.org | | 763
preprints.jmir.org | no-pdf-link | 611
https://doi.org/10.2196/preprints.22556
https://preprints.jmir.org/preprint/22556
UGH, looks simple, but javascript.
could try to re-write URL into S3 format? meh.
## psyarxiv.com (OSF?)
psyarxiv.com | | 641
psyarxiv.com | no-pdf-link | 546
https://doi.org/10.31234/osf.io/5jaqg
https://psyarxiv.com/5jaqg/
Also infuriatingly Javascript, but can do URL hack.
Should reingest, and potentially force-recrawl:
# about 67k
publisher:"Center for Open Science" in_ia:false
## publons.com
publons.com | | 6998
publons.com | no-pdf-link | 6982
https://doi.org/10.1002/jmor.21338/v2/review1
https://publons.com/publon/40260824/
These are just HTML reviews, not papers.
## saemobilus.sae.org
saemobilus.sae.org | | 795
saemobilus.sae.org | no-pdf-link | 669
https://doi.org/10.4271/as1426c
https://saemobilus.sae.org/content/as1426c
These seem to be standards, and are not open access (paywall)
## scholar.dkyobobook.co.kr
scholar.dkyobobook.co.kr | | 1043
scholar.dkyobobook.co.kr | no-pdf-link | 915
https://doi.org/10.22471/crisis.2021.6.1.18
http://scholar.dkyobobook.co.kr/searchDetail.laf?barcode=4010028199536
Korean. complex javascript, skipping.
## unreserved.rba.gov.au
unreserved.rba.gov.au | | 823
unreserved.rba.gov.au | no-pdf-link | 821
https://doi.org/10.47688/rba_archives_2006/04129
https://unreserved.rba.gov.au/users/login
Don't need to login when I tried in browser? document repo, not papers.
## wayf.switch.ch
wayf.switch.ch | | 1169
wayf.switch.ch | no-pdf-link | 809
https://doi.org/10.24451/arbor.11128
https://wayf.switch.ch/SWITCHaai/WAYF?entityID=https%3A%2F%2Farbor.bfh.ch%2Fshibboleth&return=https%3A%2F%2Farbor.bfh.ch%2FShibboleth.sso%2FLogin%3FSAMLDS%3D1%26target%3Dss%253Amem%253A5056fc0a97aeab16e5007ca63bede254cb5669d94173064d6c74c62a0f88b022
Loginwall
##
www.bloomsburycollections.com | | 1745
www.bloomsburycollections.com | no-pdf-link | 1571
https://doi.org/10.5040/9781849664264.0008
https://www.bloomsburycollections.com/book/the-political-economies-of-media-the-transformation-of-the-global-media-industries/the-political-economies-of-media-and-the-transformation-of-the-global-media-industries
These are primarily not OA/available.
##
www.emc2020.eu | | 791
www.emc2020.eu | no-pdf-link | 748
https://doi.org/10.22443/rms.emc2020.146
https://www.emc2020.eu/abstract/evaluation-of-different-rectangular-scan-strategies-for-hrstem-imaging.html
These are just abstracts, not papers.
## Emerald
www.emerald.com | | 2420
www.emerald.com | no-pdf-link | 1986
https://doi.org/10.1108/ramj-11-2020-0065
https://www.emerald.com/insight/content/doi/10.1108/RAMJ-11-2020-0065/full/html
Note that these URLs are already HTML fulltext. but the PDF is also available and easy.
re-ingest:
# only ~3k or so missing
doi_prefix:10.1108 publisher:emerald in_ia:false is_oa:true
##
www.humankineticslibrary.com | | 1122
www.humankineticslibrary.com | no-pdf-link | 985
https://doi.org/10.5040/9781718206625.ch-002
https://www.humankineticslibrary.com/encyclopedia-chapter?docid=b-9781718206625&tocid=b-9781718206625-chapter2
paywall
##
www.inderscience.com | | 1532
www.inderscience.com | no-pdf-link | 1217
https://doi.org/10.1504/ijdmb.2020.10036342
https://www.inderscience.com/info/ingeneral/forthcoming.php?jcode=ijdmb
paywall
##
www.ingentaconnect.com | | 885
www.ingentaconnect.com | no-pdf-link | 783
https://doi.org/10.15258/sst.2021.49.1.07
https://www.ingentaconnect.com/content/ista/sst/pre-prints/content-7_sst.2021.49.1_63-71;jsessionid=1joc5mmi1juht.x-ic-live-02
Annoying javascript, but easy to work around.
re-ingest:
# only a couple hundred; also re-ingest
doi_prefix:10.15258 in_ia:false year:>2018
##
www.nomos-elibrary.de | | 2235
www.nomos-elibrary.de | no-pdf-link | 1128
www.nomos-elibrary.de | spn2-wayback-error | 559
https://doi.org/10.5771/9783748907084-439
https://www.nomos-elibrary.de/10.5771/9783748907084-439/verzeichnis-der-autorinnen-und-autoren
Javascript obfuscated download button?
##
www.oecd-ilibrary.org | | 3046
www.oecd-ilibrary.org | no-pdf-link | 2869
https://doi.org/10.1787/543e84ed-en
https://www.oecd-ilibrary.org/development/applying-evaluation-criteria-thoughtfully_543e84ed-en
Paywall.
##
www.osapublishing.org | | 821
www.osapublishing.org | no-pdf-link | 615
https://doi.org/10.1364/boe.422199
https://www.osapublishing.org/boe/abstract.cfm?doi=10.1364/BOE.422199
Some of these are "pre-registered" DOIs, not published yet. Many of the
remaining are actually HTML articles, and/or have some stuff in the
`citation_pdf_url`. A core problem is captchas.
Have started adding support to fatcat for HTML crawl type based on container.
re-ingest:
container_twtpsm6ytje3nhuqfu3pa7ca7u (optica)
container_cg4vcsfty5dfvgmat5wm62wgie (optics express)
##
www.oxfordscholarlyeditions.com | | 759
www.oxfordscholarlyeditions.com | no-pdf-link | 719
https://doi.org/10.1093/oseo/instance.00266789
https://www.oxfordscholarlyeditions.com/view/10.1093/actrade/9780199593668.book.1/actrade-9780199593668-div1-27
loginwall/paywall
##
www.schweizerbart.de | | 730
www.schweizerbart.de | no-pdf-link | 653
https://doi.org/10.1127/zfg/40/1996/461
https://www.schweizerbart.de/papers/zfg/detail/40/97757/Theoretical_model_of_surface_karstic_processes?af=crossref
paywall
##
www.sciencedirect.com | | 14757
www.sciencedirect.com | no-pdf-link | 12733
www.sciencedirect.com | spn2-wayback-error | 1503
https://doi.org/10.1016/j.landurbplan.2021.104104
https://www.sciencedirect.com/science/article/pii/S0169204621000670
Bunch of crazy new hacks, but seems to be working!
re-ingest:
# to start! about 50k
doi_prefix:10.1016 is_oa:true year:2021
##
www.sciendo.com | | 1955
www.sciendo.com | no-pdf-link | 1176
https://doi.org/10.2478/awutm-2019-0012
https://www.sciendo.com/article/10.2478/awutm-2019-0012
uses lots of javascript, hard to scrape.
## Others (for reference)
| | 725990
| no-pdf-link | 209933
| success | 206134
| spn2-wayback-error | 127015
| spn2-cdx-lookup-failure | 53384
| blocked-cookie | 35867
| link-loop | 25834
| too-many-redirects | 16430
| redirect-loop | 14648
| forbidden | 13794
| terminal-bad-status | 8055
| not-found | 6399
| remote-server-error | 2402
| wrong-mimetype | 2011
| spn2-error:unauthorized | 912
| bad-redirect | 555
| read-timeout | 530
## Re-ingests
All the above combined:
container_twtpsm6ytje3nhuqfu3pa7ca7u (optica)
container_cg4vcsfty5dfvgmat5wm62wgie (optics express)
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org --ingest-type html container --container-id twtpsm6ytje3nhuqfu3pa7ca7u
=> Counter({'ingest_request': 1142, 'elasticsearch_release': 1142, 'estimate': 1142, 'kafka': 1142})
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org --ingest-type html container --container-id cg4vcsfty5dfvgmat5wm62wgie
=> Counter({'elasticsearch_release': 33482, 'estimate': 33482, 'ingest_request': 32864, 'kafka': 32864})
# only ~800 works
doi_prefix:10.35256 publisher:Florida
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org --allow-non-oa query "doi_prefix:10.35256 publisher:Florida"
=> Counter({'ingest_request': 843, 'elasticsearch_release': 843, 'estimate': 843, 'kafka': 843})
# only ~3k or so missing
doi_prefix:10.1108 publisher:emerald in_ia:false is_oa:true
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org query "doi_prefix:10.1108 publisher:emerald"
=> Counter({'ingest_request': 3812, 'elasticsearch_release': 3812, 'estimate': 3812, 'kafka': 3812})
# only a couple hundred; also re-ingest
doi_prefix:10.15258 in_ia:false year:>2018
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org --allow-non-oa --force-recrawl query "doi_prefix:10.15258 year:>2018"
=> Counter({'ingest_request': 140, 'elasticsearch_release': 140, 'estimate': 140, 'kafka': 140})
# to start! about 50k
doi_prefix:10.1016 is_oa:true year:2020
doi_prefix:10.1016 is_oa:true year:2021
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org query "doi_prefix:10.1016 year:2020"
=> Counter({'ingest_request': 75936, 'elasticsearch_release': 75936, 'estimate': 75936, 'kafka': 75936})
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org query "doi_prefix:10.1016 year:2021"
=> Counter({'ingest_request': 54824, 'elasticsearch_release': 54824, 'estimate': 54824, 'kafka': 54824})
pmcid:* year:2018
pmcid:* year:2019
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org --force-recrawl query "pmcid:* year:2018"
=> Counter({'ingest_request': 25366, 'elasticsearch_release': 25366, 'estimate': 25366, 'kafka': 25366})
./fatcat_ingest.py --env prod --enqueue-kafka --kafka-hosts wbgrp-svc263.us.archive.org --force-recrawl query "pmcid:* year:2019"
=> Counter({'ingest_request': 55658, 'elasticsearch_release': 55658, 'estimate': 55658, 'kafka': 55658})
|
