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Diffstat (limited to 'python/tests/test_extraction_ungrobided.py')
| -rw-r--r-- | python/tests/test_extraction_ungrobided.py | 178 |
1 files changed, 0 insertions, 178 deletions
diff --git a/python/tests/test_extraction_ungrobided.py b/python/tests/test_extraction_ungrobided.py deleted file mode 100644 index cb46d29..0000000 --- a/python/tests/test_extraction_ungrobided.py +++ /dev/null @@ -1,178 +0,0 @@ - -import io -import json -import mrjob -import pytest -import struct -import responses -import happybase_mock -import wayback.exception -from unittest import mock -from common import parse_ungrobided_line -from extraction_ungrobided import MRExtractUnGrobided - - -FAKE_PDF_BYTES = b"%PDF SOME JUNK" + struct.pack("!q", 112853843) -OK_UNGROBIDED_LINE = b"\t".join(( - b"sha1:3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ", - b"""{"c": 1, "d": "2017-07-06T07:54:11", "f": "CITESEERX-CRAWL-2017-06-20-20170706075012840-00388-3671~wbgrp-svc285.us.archive.org~8443.warc.gz", "o": 914718776, "u": "http://www.ibc7.org/article/file_down.php?mode%3Darticle_print%26pid%3D250"}""", - b"application/pdf", - b"""{"c_size": 501, "dt": "20170706075411", "offset": 914718776, "surt": "org,ibc7)/article/file_down.php?mode=article_print&pid=250", "url": "http://www.ibc7.org/article/file_down.php?mode%3Darticle_print%26pid%3D250", "warc": "CITESEERX-CRAWL-2017-06-20-20170706074206206-00379-00388-wbgrp-svc285/CITESEERX-CRAWL-2017-06-20-20170706075012840-00388-3671~wbgrp-svc285.us.archive.org~8443.warc.gz"}""", -)) - -with open('tests/files/23b29ea36382680716be08fc71aa81bd226e8a85.xml', 'r') as f: - REAL_TEI_XML = f.read() - -@pytest.fixture -def job(): - """ - Note: this mock only seems to work with job.run_mapper(), not job.run(); - the later results in a separate instantiation without the mock? - """ - job = MRExtractUnGrobided(['--no-conf', '-']) - - conn = happybase_mock.Connection() - conn.create_table('wbgrp-journal-extract-test', - {'file': {}, 'grobid0': {}, 'f': {}}) - job.hb_table = conn.table('wbgrp-journal-extract-test') - - return job - - -@mock.patch('extraction_ungrobided.MRExtractUnGrobided.fetch_warc_content', return_value=(FAKE_PDF_BYTES, None)) -@responses.activate -def test_mapper_single_line(mock_fetch, job): - - responses.add(responses.POST, 'http://localhost:8070/api/processFulltextDocument', status=200, - body=REAL_TEI_XML, content_type='text/xml') - - raw = io.BytesIO(OK_UNGROBIDED_LINE) - - output = io.BytesIO() - job.sandbox(stdin=raw, stdout=output) - - job.run_mapper() - - # for debugging tests - #print(output.getvalue().decode('utf-8')) - #print(list(job.hb_table.scan())) - - # wayback gets FETCH 1x times - mock_fetch.assert_called_once_with( - "CITESEERX-CRAWL-2017-06-20-20170706074206206-00379-00388-wbgrp-svc285/CITESEERX-CRAWL-2017-06-20-20170706075012840-00388-3671~wbgrp-svc285.us.archive.org~8443.warc.gz", - 914718776, - 501) - - # grobid gets POST 1x times - assert len(responses.calls) == 1 - - # HBase - assert job.hb_table.row(b'1') == {} - - # Saved extraction info - row = job.hb_table.row(b'sha1:3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ') - - assert struct.unpack("!q", row[b'file:size'])[0] == len(FAKE_PDF_BYTES) - # file:mime should actually not get clobbered by GROBID updater - #assert row[b'file:mime'] == b"application/pdf" - assert struct.unpack("!q", row[b'grobid0:status_code'])[0] == 200 - # TODO: assert row[b'grobid0:quality'] == None - status = json.loads(row[b'grobid0:status'].decode('utf-8')) - assert type(status) == type(dict()) - assert row[b'grobid0:tei_xml'].decode('utf-8') == REAL_TEI_XML - tei_json = json.loads(row[b'grobid0:tei_json'].decode('utf-8')) - metadata = json.loads(row[b'grobid0:metadata'].decode('utf-8')) - assert tei_json['title'] == metadata['title'] - assert 'body' in tei_json - assert 'body' not in metadata - -@mock.patch('extraction_ungrobided.MRExtractUnGrobided.fetch_warc_content', return_value=(FAKE_PDF_BYTES, None)) -@responses.activate -def test_mapper_lines(mock_fetch, job): - - responses.add(responses.POST, 'http://localhost:8070/api/processFulltextDocument', status=200, - body=REAL_TEI_XML, content_type='text/xml') - - raw = io.BytesIO(b"""sha1:23PTUXWSNSVE4HS5J7ELDUUG63J2FPCI\t{"c": 1, "d": "2016-06-09T00:27:36", "f": "WIDE-20160609001810-06993.warc.gz", "o": 287880616, "u": "http://www.case-research.eu/sites/default/files/publications/18092393_E-brief_Dabrowski_Monetary_Policy_final_0.pdf"}\tapplication/pdf\t{"c_size": 68262, "dt": "20160609002736", "offset": 287880616, "surt": "eu,case-research)/sites/default/files/publications/18092393_e-brief_dabrowski_monetary_policy_final_0.pdf", "url": "http://www.case-research.eu/sites/default/files/publications/18092393_E-brief_Dabrowski_Monetary_Policy_final_0.pdf", "warc": "WIDE-20160609000312-crawl427/WIDE-20160609001810-06993.warc.gz"} -sha1:23PW2APYHNBPIBRIVNQ6TMKUNY53UL3D\t{"c": 1, "d": "2016-01-07T03:29:03", "f": "MUSEUM-20160107025230-02354.warc.gz", "o": 413484441, "u": "http://www.portlandoregon.gov/fire/article/363695"}\tapplication/pdf\t{"c_size": 44600, "dt": "20160107032903", "offset": 413484441, "surt": "gov,portlandoregon)/fire/article/363695", "url": "http://www.portlandoregon.gov/fire/article/363695", "warc": "MUSEUM-20160107004301-crawl891/MUSEUM-20160107025230-02354.warc.gz"} -sha1:23RJIHUIOYY5747CR6YYCTMACXDCFYTT\t{"c": 1, "d": "2014-06-07T18:00:56", "f": "ARCHIVEIT-219-QUARTERLY-20047-20140607125555378-00017-wbgrp-crawl051.us.archive.org-6442.warc.gz", "o": 720590380, "u": "https://www.indiana.edu/~orafaq/faq/pdf.php?cat=36&id=264&artlang=en"}\tapplication/pdf\t{"c_size": 3727, "dt": "20140607180056", "offset": 720590380, "surt": "edu,indiana)/~orafaq/faq/pdf.php?artlang=en&cat=36&id=264", "url": "https://www.indiana.edu/~orafaq/faq/pdf.php?cat=36&id=264&artlang=en", "warc": "ARCHIVEIT-219-QUARTERLY-20047-00001/ARCHIVEIT-219-QUARTERLY-20047-20140607125555378-00017-wbgrp-crawl051.us.archive.org-6442.warc.gz"}""") - - - output = io.BytesIO() - job.sandbox(stdin=raw, stdout=output) - - job.run_mapper() - - # for debugging tests - #print(output.getvalue().decode('utf-8')) - #print(list(job.hb_table.scan())) - - # grobid gets POST 3x times - assert len(responses.calls) == 3 - - # wayback gets FETCH 3x times - mock_fetch.assert_has_calls(( - mock.call("WIDE-20160609000312-crawl427/WIDE-20160609001810-06993.warc.gz", 287880616, 68262), - mock.call("MUSEUM-20160107004301-crawl891/MUSEUM-20160107025230-02354.warc.gz", 413484441, 44600), - mock.call("ARCHIVEIT-219-QUARTERLY-20047-00001/ARCHIVEIT-219-QUARTERLY-20047-20140607125555378-00017-wbgrp-crawl051.us.archive.org-6442.warc.gz", 720590380, 3727), - )) - - # Saved extraction info - assert job.hb_table.row(b'sha1:3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ') == {} - assert job.hb_table.row(b'sha1:23PTUXWSNSVE4HS5J7ELDUUG63J2FPCI') != {} - assert job.hb_table.row(b'sha1:23PW2APYHNBPIBRIVNQ6TMKUNY53UL3D') != {} - assert job.hb_table.row(b'sha1:23RJIHUIOYY5747CR6YYCTMACXDCFYTT') != {} - - row = job.hb_table.row(b'sha1:23RJIHUIOYY5747CR6YYCTMACXDCFYTT') - assert struct.unpack("!q", row[b'file:size'])[0] == len(FAKE_PDF_BYTES) - # file:mime should actually not get clobbered by GROBID updater - #assert row[b'file:mime'] == b"application/pdf" - assert struct.unpack("!q", row[b'grobid0:status_code'])[0] == 200 - status = json.loads(row[b'grobid0:status'].decode('utf-8')) - assert type(status) == type(dict()) - assert row[b'grobid0:tei_xml'].decode('utf-8') == REAL_TEI_XML - tei_json = json.loads(row[b'grobid0:tei_json'].decode('utf-8')) - metadata = json.loads(row[b'grobid0:metadata'].decode('utf-8')) - assert tei_json['title'] == metadata['title'] - assert 'body' in tei_json - assert 'body' not in metadata - -def test_parse_ungrobided_invalid(job): - - print("space-prefixed line") - raw = " com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz" - info, status = job.parse_ungrobided_line(raw) - assert info is None - assert status['status'] == "invalid" - assert 'prefix' in status['reason'] - - print("commented line") - raw = "#com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz" - info, status = job.parse_ungrobided_line(raw) - assert info is None - assert status['status'] == "invalid" - assert 'prefix' in status['reason'] - - print("wrong column count") - raw = "a b c d e" - info, status = job.parse_ungrobided_line(raw) - assert info is None - assert status['status'] == "invalid" - assert 'parse' in status['reason'] - - print("CDX line, somehow") - raw = "com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf - 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz" - info, status = job.parse_ungrobided_line(raw) - assert info is None - print(status) - assert status['status'] == "invalid" - assert 'parse' in status['reason'] - -def test_parse_ungrobided_valid(): - - parsed = parse_ungrobided_line(OK_UNGROBIDED_LINE.decode('utf-8')) - assert parsed['key'] == "sha1:3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ" - assert parsed['f:c']['u'] == "http://www.ibc7.org/article/file_down.php?mode%3Darticle_print%26pid%3D250" - assert parsed['file:mime'] == "application/pdf" - assert parsed['file:cdx']['c_size'] == 501 - assert parsed['file:cdx']['dt'] == "20170706075411" |