ingest fileset fixes, and some test coverage

4 files changed, 110 insertions, 16 deletions

diff --git a/python/fatcat_tools/importers/common.py b/python/fatcat_tools/importers/common.py
index cd51a24c..475cb97a 100644
--- a/python/fatcat_tools/importers/common.py
+++ b/python/fatcat_tools/importers/common.py
@@ -916,3 +916,14 @@ def make_kafka_consumer(
     )
     print("Consuming from kafka topic {}, group {}".format(topic_name, group))
     return consumer
+
+
+def filesets_very_similar(a: FilesetEntity, b: FilesetEntity) -> bool:
+    """
+    This helper method checks if two Fileset entities are effectively equivalent: same set of files with comparable hashes.
+
+    Uses a set() of SHA1 hashes to test for equivalence.
+    """
+    a_hashes = set([f.sha1 for f in a.manifest])
+    b_hashes = set([f.sha1 for f in b.manifest])
+    return a == b
diff --git a/python/fatcat_tools/importers/ingest.py b/python/fatcat_tools/importers/ingest.py
index 62e0e854..c8d04d6f 100644
--- a/python/fatcat_tools/importers/ingest.py
+++ b/python/fatcat_tools/importers/ingest.py
@@ -11,7 +11,7 @@ from fatcat_openapi_client import (
     WebcaptureEntity,
 )
 
-from .common import EntityImporter, make_rel_url
+from .common import EntityImporter, filesets_very_similar, make_rel_url
 
 
 class IngestFileResultImporter(EntityImporter):
@@ -693,9 +693,6 @@ class IngestFilesetResultImporter(IngestFileResultImporter):
                     rel="webarchive-base",
                 )
             )
-        # TODO: repository-base
-        # TODO: web-base
-
         if strategy == "archiveorg-fileset-bundle" and row.get("archiveorg_item_name"):
             urls.append(
                 fatcat_openapi_client.FilesetUrl(
@@ -727,6 +724,15 @@ class IngestFilesetResultImporter(IngestFileResultImporter):
                     rel="repository-base",
                 )
             )
+        elif row.get("terminal"):
+            # fallback generic web URL
+            urls.append(
+                fatcat_openapi_client.FilesetUrl(
+                    url=row["terminal"]["terminal_url"],
+                    rel="web",
+                )
+            )
+
         return urls
 
     def parse_record(self, row: Dict[str, Any]) -> FilesetEntity:
@@ -781,7 +787,7 @@ class IngestFilesetResultImporter(IngestFileResultImporter):
                 self.counts["skip-partial-file-info"] += 1
                 return None
             if ingest_file.get("platform_url"):
-                # XXX: should we include this?
+                # TODO: should we include this?
                 fsf.extra["original_url"] = ingest_file["platform_url"]
             if ingest_file.get("terminal_url") and ingest_file.get("terminal_dt"):
                 fsf.extra[
@@ -805,25 +811,25 @@ class IngestFilesetResultImporter(IngestFileResultImporter):
 
         # check for existing edits-in-progress with same URL
         for other in self._entity_queue:
-            # XXX: how to duplicate check?
-            if other.original_url == fse.original_url:
+            if filesets_very_similar(other, fse):
                 self.counts["skip-in-queue"] += 1
+                self.counts["skip"] += 1
                 return False
 
         # lookup sha1, or create new entity (TODO: API doesn't support this yet)
         # existing = None
 
         # NOTE: in lieu of existing checks (by lookup), only allow one fileset per release
-        release = self.api.get_release(fse.release_ids[0], expand="filesets")
-        if release.filesets:
-            # XXX: how to duplicate check filesets?
+        if not self.bezerk_mode:
+            release = self.api.get_release(fse.release_ids[0], expand="filesets")
             # check if this is an existing match, or just a similar hit
-            for other in release.filesets:
-                if fse.original_url == other.original_url:
-                    # TODO: compare very similar timestamps of same time (different formats)
+            for other in release.filesets or []:
+                if filesets_very_similar(other, fse):
                     self.counts["exists"] += 1
                     return False
+            # for now, being conservative and just skipping if release has any other fileset
             self.counts["skip-release-has-fileset"] += 1
+            self.counts["skip"] += 1
             return False
 
         return True
diff --git a/python/tests/files/example_fileset_ingest_result.json b/python/tests/files/example_fileset_ingest_result.json
new file mode 100644
index 00000000..6b460b33
--- /dev/null
+++ b/python/tests/files/example_fileset_ingest_result.json
@@ -0,0 +1,20 @@
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diff --git a/python/tests/import_ingest.py b/python/tests/import_ingest.py
index d9e7d294..d86d6d7b 100644
--- a/python/tests/import_ingest.py
+++ b/python/tests/import_ingest.py
@@ -5,6 +5,7 @@ from fixtures import *
 
 from fatcat_tools.importers import (
     IngestFileResultImporter,
+    IngestFilesetResultImporter,
     IngestWebResultImporter,
     JsonLinePusher,
 )
@@ -20,6 +21,11 @@ def ingest_web_importer(api):
     yield IngestWebResultImporter(api)
 
 
+@pytest.fixture(scope="function")
+def ingest_fileset_importer(api):
+    yield IngestFilesetResultImporter(api)
+
+
 # TODO: use API to check that entities actually created...
 def test_ingest_importer_basic(ingest_importer):
     with open("tests/files/example_ingest.json", "r") as f:
@@ -58,7 +64,6 @@ def test_ingest_importer_xml(ingest_importer):
     with open("tests/files/example_ingest_xml.json", "r") as f:
         ingest_importer.bezerk_mode = True
         counts = JsonLinePusher(ingest_importer, f).run()
-    print(counts)
     assert counts["insert"] == 1
     assert counts["exists"] == 0
     assert counts["skip"] == 0
@@ -86,7 +91,6 @@ def test_ingest_importer_web(ingest_web_importer):
     with open("tests/files/example_ingest_html.json", "r") as f:
         ingest_web_importer.bezerk_mode = True
         counts = JsonLinePusher(ingest_web_importer, f).run()
-    print(counts)
     assert counts["insert"] == 1
     assert counts["exists"] == 0
     assert counts["skip"] == 0
@@ -139,7 +143,6 @@ def test_ingest_importer_stage(ingest_importer, api):
         ingest_importer.reset()
         ingest_importer.push_record(raw)
         counts = ingest_importer.finish()
-        print(counts)
         assert counts["total"] == 1
         assert counts[row["status"]] == 1
 
@@ -182,3 +185,57 @@ def test_ingest_dict_parse_old(ingest_importer):
             if u.rel == "webarchive":
                 assert u.url.startswith("https://web.archive.org/")
         assert len(f.release_ids) == 1
+
+
+def test_ingest_fileset_dict_parse(ingest_fileset_importer):
+    with open("tests/files/example_fileset_ingest_result.json", "r") as f:
+        raw = json.loads(f.readline())
+        fs = ingest_fileset_importer.parse_record(raw)
+        assert len(fs.manifest) == 3
+        assert fs.manifest[0].sha1 == "c0669e84e7b9052cc0f342e8ce7d31d59956326a"
+        assert fs.manifest[0].md5 == "caf4d9fc2c6ebd0d9251ac84e0b6b006"
+        assert fs.manifest[0].extra["mimetype"] == "application/x-hdf"
+        assert fs.manifest[0].size == 16799750
+        assert fs.manifest[0].path == "N2 on food R_2010_03_25__10_53_27___4___1_features.hdf5"
+        assert (
+            fs.manifest[0].extra["original_url"]
+            == "https://zenodo.org/api/files/563203f6-6de5-46d9-b305-ba42604f2508/N2%20on%20food%20R_2010_03_25__10_53_27___4___1_features.hdf5"
+        )
+        assert len(fs.urls) == 2
+        for u in fs.urls:
+            if u.rel == "web":
+                assert u.url == "https://zenodo.org/record/1028059"
+            if u.rel == "archive-base":
+                assert u.url == "https://archive.org/download/zenodo.org-1028059/"
+        assert len(fs.release_ids) == 1
+
+
+def test_ingest_fileset_importer(ingest_fileset_importer):
+    last_index = ingest_fileset_importer.api.get_changelog(limit=1)[0].index
+    with open("tests/files/example_fileset_ingest_result.json", "r") as f:
+        ingest_fileset_importer.bezerk_mode = True
+        counts = JsonLinePusher(ingest_fileset_importer, f).run()
+    assert counts["insert"] == 7
+    assert counts["exists"] == 0
+    assert counts["skip"] == 13
+    assert counts["skip-release-not-found"] == 13
+
+    # fetch most recent editgroup
+    change = ingest_fileset_importer.api.get_changelog_entry(index=last_index + 1)
+    eg = change.editgroup
+    assert eg.description
+    assert "filesets crawled from web" in eg.description.lower()
+    assert eg.extra["git_rev"]
+    assert "fatcat_tools.IngestFilesetResultImporter" in eg.extra["agent"]
+
+    # re-insert; should skip
+    with open("tests/files/example_fileset_ingest_result.json", "r") as f:
+        ingest_fileset_importer.reset()
+        ingest_fileset_importer.bezerk_mode = False
+        counts = JsonLinePusher(ingest_fileset_importer, f).run()
+
+    assert counts["insert"] == 0
+    assert counts["exists"] == 0
+    assert counts["skip"] == 20
+    assert counts["skip-release-not-found"] == 13
+    assert counts["skip-release-has-fileset"] == 7