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| author | Thomas Bushnell, BSG <tb@debian.org> | 2005-11-02 14:55:21 -0800 |
|---|---|---|
| committer | Bryan Newbold <bnewbold@robocracy.org> | 2017-02-20 00:05:32 -0800 |
| commit | 34c54a22ff7818bb8b38ef4d9c87dbbcb221ba73 (patch) | |
| tree | 1189d06a81277bcf8539b0260a69a19f6038effb /ncbi-dna.txi | |
| parent | 611b3db17894e5fdc0db3d49eaf6743d27b44233 (diff) | |
| parent | 5145dd3aa0c02c9fc496d1432fc4410674206e1d (diff) | |
| download | slib-34c54a22ff7818bb8b38ef4d9c87dbbcb221ba73.tar.gz slib-34c54a22ff7818bb8b38ef4d9c87dbbcb221ba73.zip | |
Import Debian changes 3a2-1debian/3a2-1
slib (3a2-1) unstable; urgency=low
* New upstream release.
* Acknowledge NMU. (Closes: #281809)
* Makefile: Don't hack Makefile; use rules instead.
* debian/rules: Set on make invocations: prefix, htmldir, TEXI2HTML.
* debian/rules (clean): Clean more stuff here.
* Makefile: Comment out old rule for $(htmldir)slib_toc.html. Instead,
specify directly that the texi2html invocation produces that file.
* debian/rules (binary-indep): Find web files in slib subdir.
* debian/control (Build-Depends-Indep): Go back to using scm.
Diffstat (limited to 'ncbi-dna.txi')
| -rw-r--r-- | ncbi-dna.txi | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/ncbi-dna.txi b/ncbi-dna.txi index 9a5babc..160b9ee 100644 --- a/ncbi-dna.txi +++ b/ncbi-dna.txi @@ -5,17 +5,20 @@ Reads the NCBI-format DNA sequence following the word @samp{ORIGIN} from @var{port}. @end defun + @defun ncbi:read-file file Reads the NCBI-format DNA sequence following the word @samp{ORIGIN} from @var{file}. @end defun + @defun mrna<-cdna str Replaces @samp{T} with @samp{U} in @var{str} @end defun + @defun codons<-cdna cdna Returns a list of three-letter symbol codons comprising the protein @@ -23,12 +26,14 @@ sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + @defun protein<-cdna cdna Returns a list of three-letter symbols for the protein sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + @defun p<-cdna cdna Returns a string of one-letter amino acid codes for the protein @@ -36,6 +41,7 @@ sequence encoded by @var{cdna} starting with its first occurence of @samp{atg}. @end defun + These cDNA count routines provide a means to check the nucleotide sequence with the @samp{BASE COUNT} line preceding the sequence from NCBI. @@ -47,8 +53,10 @@ Returns a list of counts of @samp{a}, @samp{c}, @samp{g}, and @samp{t} occurrencing in @var{cdna}. @end defun + @defun cdna:report-base-count cdna Prints the counts of @samp{a}, @samp{c}, @samp{g}, and @samp{t} occurrencing in @var{cdna}. @end defun + |