commit notes and issnl_prefix.py helper script

4 files changed, 157 insertions, 0 deletions

diff --git a/extra/issnl_prefix.py b/extra/issnl_prefix.py
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+++ b/extra/issnl_prefix.py
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+import sys
+import json
+
+for line in sys.stdin:
+    if not line.strip():
+        continue
+    record = json.loads(line)["@graph"]
+    issnl = None
+    for el in record:
+        if el.get("@type") == "http://id.loc.gov/ontologies/bibframe/IssnL":
+            issnl = el["value"]
+            break
+    if issnl:
+        print("\t".join((issnl, json.dumps(record, sort_keys=True))))
diff --git a/notes/awol-index.md b/notes/awol-index.md
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+++ b/notes/awol-index.md
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+
+Original source: <https://isaw.nyu.edu/publications/awol-index/>
+
+Copyright statement:
+
+    The production and publication of The AWOL Index contributes significant
+    additional value both to the content itself and to its presentation and
+    utility. This new intellectual property is covered by copyright (2015, New
+    York University). The full content of The AWOL Index, both in HTML and JSON
+    formats, is published under the terms of a Creative Commons
+    Attribution-ShareAlike 4.0 International License .
+
+Extracting ISSN-L, Title, URL from this corpus.
+
+Commands:
+
+    unzip awol-index-json.zip
+    fd -I .json json/ | parallel cat {} | jq . -c | pv -l > awol-index-combined.json
+    cat awol-index-combined.json | rg '"is_part_of":null' > awol-index-top.json
+    cat awol-index-top.json | rg '"issn":' > awol-index-top-issn.json
+
+    wc -l awol-index-combined.json awol-index-top.json awol-index-top-issn.json
+    52006 awol-index-combined.json
+     1302 awol-index-top.json
+      503 awol-index-top-issn.json
+
+    rg '"issn":' awol-index-top.json | wc -l
+    503
+
+    cat awol-index-combined.json | jq .identifiers.issn.generic -c | rg -v ^null | sort -u | wc -l
+    753
+
+    cat awol-index-top.json | jq .identifiers.issn.generic -c | rg -v ^null | sort -u | wc -l
+    486
+
+    cat awol-index-top-issn.json | jq .identifiers.issn.generic -c | rg -v ^null | sort -u | wc -l
+    486
+
diff --git a/notes/longtail_crawl.txt b/notes/longtail_crawl.txt
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+++ b/notes/longtail_crawl.txt
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+
+    .mode tabs
+    .output longtail_homepage_urls.tsv
+
+    SELECT homepage.url, homepage.issnl
+    FROM homepage LEFT JOIN journal ON homepage.issnl = journal.issnl
+    WHERE homepage.terminal_status_code = 200 AND journal.is_longtail = 1 AND homepage.domain != 'archive.org' AND homepage.host NOT LIKE '%scielo%' AND homepage.domain != 'jst.go.jp' AND homepage.host != 'books.google.com' AND homepage.host != 'www.google.com' AND journal.has_dois = 0;
+
+
+## Test Queries
+
+    SELECT count(distinct homepage.issnl) FROM homepage LEFT JOIN journal ON homepage.issnl = journal.issnl WHERE homepage.terminal_status_code = 200 AND journal.is_longtail = 1;
+
+    SELECT ... FROM homepage LEFT JOIN journal ON homepage.issnl = journal.issnl WHERE homepage.terminal_status_code = 200 AND journal.is_longtail = 1;
+
+
+    SELECT homepage.domain, COUNT(*) FROM homepage LEFT JOIN journal ON homepage.issnl = journal.issnl WHERE homepage.terminal_status_code = 200 AND journal.is_longtail = 1 AND homepage.domain != 'archive.org' AND homepage.host NOT LIKE '%scielo%' AND homepage.domain != 'jst.go.jp' AND homepage.host != 'books.google.com' AND homepage.host != 'www.google.com' AND journal.has_dois = 0
+    GROUP BY homepage.domain ORDER BY COUNT(*) DESC LIMIT 20;
+
+    SELECT homepage.suffix , COUNT(*) FROM homepage LEFT JOIN journal ON homepage.issnl = journal.issnl WHERE homepage.terminal_status_code = 200 AND journal.is_longtail = 1 AND homepage.domain != 'archive.org'
+    GROUP BY homepage.suffix ORDER BY COUNT(*) DESC LIMIT 20;
diff --git a/notes/missing_homepage_task.md b/notes/missing_homepage_task.md
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+++ b/notes/missing_homepage_task.md
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+
+## Goal
+
+For many long-tail journals, we have no known homepage. It is likely many of
+these metadata records were actually never published, or are otherwise bad
+metadata, but many are legitimate but simply missing metadata.
+
+Want to rapidly skim though thousands of such journals and record homepage URLs
+if they exist.
+
+## Instructions
+
+For each row in the spreadsheet, search the web or other sources for a journal
+homepage. This should be an official, active site where new papers are
+published, as well as historical papers.
+
+The recommended workflow is to search for the ISSN-L and name in google, skim
+the first page for likely hits, then click through to confirm that any hits are
+actually journal sites. An easy way to do this is to check for the ISSN (or the
+alternate "ISSNe" or "ISSNp") in the webpage itself; we will also check for
+these identifiers in an automated manner to verify homepage matches. If there
+do not seem to be any hits, mark the row as skipped and move on. You will
+notice that many journals are published on platforms or using common software
+like OJS (Open Journal Systems), Wordpress, or SciElo. If you notice this,
+please tag in the `platform` column.
+
+Generally are not interested in URLs to sites that are just indexing or listing
+metadata about a journal, which often show up in search results. If it seems
+like a journal has been retired, archived, or mirrored elsewhere, with all the
+papers available, you can put such a URL in `other_url`. This is relatively
+rare.
+
+If the metadata (journal name) is aggregiously poor or mangled, and you find
+the corrected canonical title, you can put that in the `corrected_title` column
+(optional).
+
+Recommend running through 25 random rows first without recording results to get
+a feel for the process and ask any question.
+
+Specific platforms we don't want any URLs from (not a complete list):
+
+- issn.org
+- sherpa.ac.uk
+- any other lists of journal information
+- wikidata.org
+- scimago
+
+Platforms which are ok to link to in the `other_url` column if no other hits:
+
+- web.archive.org
+
+Core columns to fill in for each row:
+
+- `skipped` (yes or blank)
+- `homepage_url`
+- `platform` (eg, OJS, scielo, hypothesis, or blank)
+
+Other columns that can be filled in, but aren't expecting them for most:
+
+- `other_url`
+- `corrected_title`
+- `original_title` (non-English)
+- `corrected_publisher`
+- `inactive` (yes/no)
+- `comment`
+
+## Export Task List
+
+Dump to TSV:
+
+    .headers on
+    .mode tabs
+    .output chocula_missing_hompages_longtail.2020-05-05.tsv
+
+    SELECT issnl, issnp, issne, name, publisher, country, lang, release_count
+    FROM journal
+    WHERE
+        any_homepage=0
+        AND has_dois=0
+        AND is_longtail=1
+        AND release_count < 10
+        AND valid_issnl=1;
+
+NOTE: this is a partial list, as of 2020-05-05 about 4600 rows,