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using ImageView, Images
img = imread("flash4.jpg")
img.data = img.data'
#display(img, pixelspacing = [1,1])
# flash is 220 to 280 in the x-axis
# flash_data = img.data[220:280,:]
flash_avg = Float64[mean(img.data[r, 220:280]) for r = 1:size(img.data,1)]
noflash_avg = Float64[mean(img.data[r, 300:400]) for r = 1:size(img.data,1)]
# using Winston
# plot(flash_avg)
# plot(noflash_avg)
# WRONG: background_F = Float64[mean(img.data[70:100, :])]
background_avg = Float64[mean(img.data[r, 70:100]) for r = 1:size(img.data,1)]
flash_avg ./= background_avg
noflash_avg ./= background_avg
function unitify(r, Ca2_baseline, K_D)
return r * K_D / ((K_D/Ca2_baseline) - r + 1)
end
Ca2_baseline = 100
K_D = 700
#Ca2_baseline = 150
#K_D = 1000
dT = 1.53
t = dT * [0:length(flash_avg)]
figure()
hold(true)
plot(t, Float64[unitify(v, Ca2_baseline, K_D) for v = flash_avg[:]], color="red")
plot(t, Float64[unitify(v, Ca2_baseline, K_D) for v = noflash_avg[:]], color="blue")
ylabel("[ca](nM)")
xlabel("Time (ms)")
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