From 93b8d7364359ba7f1a4adbc022286abcdf310834 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Thu, 25 Jun 2020 16:31:55 -0700 Subject: SQL commands for re-trying PDF ingests --- sql/ingest_again.md | 158 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 158 insertions(+) create mode 100644 sql/ingest_again.md (limited to 'sql') diff --git a/sql/ingest_again.md b/sql/ingest_again.md new file mode 100644 index 0000000..3b4b990 --- /dev/null +++ b/sql/ingest_again.md @@ -0,0 +1,158 @@ + +## re-ingest some broken + + COPY ( + SELECT row_to_json(ingest_request.*) FROM ingest_request + LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_file_result.ingest_type = 'pdf' + AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL + AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL + AND ingest_file_result.hit = false + AND ingest_file_result.status like 'spn2-%' + AND ingest_file_result.status != 'spn2-error:invalid-url-syntax' + AND ingest_file_result.status != 'spn2-error:spn2-error:filesize-limit' + ) TO '/grande/snapshots/reingest_spn2-error_current.rows.json'; + + COPY ( + SELECT row_to_json(ingest_request.*) FROM ingest_request + LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_file_result.ingest_type = 'pdf' + AND ingest_file_result.hit = false + AND ingest_file_result.status like 'cdx-error' + AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL + AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL + AND (ingest_request.ingest_request_source = 'fatcat-changelog' + OR ingest_request.ingest_request_source = 'fatcat-ingest') + ) TO '/grande/snapshots/reingest_cdx-error_current.rows.json'; + + COPY ( + SELECT row_to_json(ingest_request.*) FROM ingest_request + LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_file_result.ingest_type = 'pdf' + AND ingest_file_result.hit = false + AND ingest_file_result.status like 'cdx-error' + AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL + AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL + AND (ingest_request.ingest_request_source != 'fatcat-changelog' + AND ingest_request.ingest_request_source != 'fatcat-ingest') + ) TO '/grande/snapshots/reingest_cdx-error_bulk_current.rows.json'; + + COPY ( + SELECT row_to_json(ingest_request.*) FROM ingest_request + LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_file_result.ingest_type = 'pdf' + AND ingest_file_result.hit = false + AND ingest_file_result.status like 'wayback-error' + AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL + AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL + ) TO '/grande/snapshots/reingest_wayback-error_current.rows.json'; + + COPY ( + SELECT row_to_json(ingest_request.*) FROM ingest_request + LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_file_result.ingest_type = 'pdf' + AND ingest_file_result.hit = false + AND ingest_file_result.status like 'gateway-timeout' + AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL + AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL + AND (ingest_request.ingest_request_source = 'fatcat-changelog' + OR ingest_request.ingest_request_source = 'fatcat-ingest') + ) TO '/grande/snapshots/reingest_gateway-timeout.rows.json'; + + COPY ( + SELECT row_to_json(ingest_request.*) FROM ingest_request + LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_file_result.ingest_type = 'pdf' + AND ingest_file_result.hit = false + AND ingest_file_result.status like 'petabox-error' + AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL + AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL + AND (ingest_request.ingest_request_source = 'fatcat-changelog' + OR ingest_request.ingest_request_source = 'fatcat-ingest') + ) TO '/grande/snapshots/reingest_petabox-error_current.rows.json'; + +Transform: + + ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_spn2-error_current.rows.json | shuf > reingest_spn2-error_current.json + ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_cdx-error_current.rows.json | shuf > reingest_cdx-error_current.json + ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_cdx-error_bulk_current.rows.json | shuf > reingest_cdx-error_bulk_current.json + ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_wayback-error_current.rows.json | shuf > reingest_wayback-error_current.json + ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_gateway-timeout.rows.json | shuf > reingest_gateway-timeout.json + ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_petabox-error_current.rows.json | shuf > reingest_petabox-error_current.json + +Push to kafka (shuffled): + + cat reingest_spn2-error_current.json reingest_cdx-error_current.json reingest_wayback-error_current.json reingest_petabox-error_current.json | shuf | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1 + + cat reingest_gateway-timeout.json | shuf | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p 0 + + cat reingest_cdx-error_bulk_current.json | shuf | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests-bulk -p -1 + +Push to kafka (not shuffled): + + cat reingest_spn2-error_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1 + cat reingest_cdx-error_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1 + cat reingest_cdx-error_bulk_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests-bulk -p -1 + cat reingest_wayback-error_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1 + cat reingest_gateway-timeout.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1 + cat reingest_petabox-error_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1 + +## just recent fatcat-ingest + + COPY ( + SELECT row_to_json(ingest_request.*) FROM ingest_request + LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_file_result.ingest_type = 'pdf' + AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL + -- AND ingest_file_result.updated > NOW() - '24 hour'::INTERVAL + AND ingest_file_result.updated > NOW() - '7 day'::INTERVAL + AND ingest_file_result.hit = false + AND (ingest_file_result.status like 'spn2-%' + OR ingest_file_result.status like 'cdx-error' + OR ingest_file_result.status like 'gateway-timeout' + OR ingest_file_result.status like 'wayback-error' + ) + AND ingest_file_result.status != 'spn2-error:invalid-url-syntax' + AND ingest_file_result.status != 'spn2-error:spn2-error:filesize-limit' + AND ingest_request.ingest_request_source = 'fatcat-ingest' + ) TO '/grande/snapshots/reingest_fatcat_current.rows.json'; + + # note: shuf + ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_fatcat_current.rows.json | shuf > reingest_fatcat_current.json + + cat reingest_fatcat_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1 + +## specific domains + +protocols.io: + + SELECT ingest_file_result.ingest_type, ingest_file_result.status, COUNT(*) + FROM ingest_file_result + LEFT JOIN ingest_request + ON ingest_file_result.ingest_type = ingest_request.ingest_type + AND ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_request.base_url LIKE '%10.17504/protocols.io%' + GROUP BY ingest_file_result.ingest_type, ingest_file_result.status + ORDER BY COUNT DESC + LIMIT 20; + +biorxiv/medrxiv: + + SELECT ingest_file_result.ingest_type, ingest_file_result.status, COUNT(*) + FROM ingest_file_result + LEFT JOIN ingest_request + ON ingest_file_result.ingest_type = ingest_request.ingest_type + AND ingest_file_result.base_url = ingest_request.base_url + WHERE ingest_request.ingest_type = 'pdf' + AND ingest_request.base_url LIKE '%10.1101/20%' + GROUP BY ingest_file_result.ingest_type, ingest_file_result.status + ORDER BY COUNT DESC + LIMIT 20; -- cgit v1.2.3