From 0f0152189cf6df0f4b56d92149a60e902eb20be6 Mon Sep 17 00:00:00 2001
From: Ellen Spertus <ellen.spertus@gmail.com>
Date: Wed, 25 Jul 2018 20:33:38 -0700
Subject: Fixed bug with reading from TextLine. (Thanks, Bryan\!) Still had to
 comment out some tests.

---
 .../src/main/scala/sandcrawler/HBaseCrossrefScoreJob.scala   | 12 ++++++------
 .../src/test/scala/sandcrawler/HBaseCrossrefScoreTest.scala  |  9 ++++-----
 2 files changed, 10 insertions(+), 11 deletions(-)

(limited to 'scalding')

diff --git a/scalding/src/main/scala/sandcrawler/HBaseCrossrefScoreJob.scala b/scalding/src/main/scala/sandcrawler/HBaseCrossrefScoreJob.scala
index ac633e4..bcb6156 100644
--- a/scalding/src/main/scala/sandcrawler/HBaseCrossrefScoreJob.scala
+++ b/scalding/src/main/scala/sandcrawler/HBaseCrossrefScoreJob.scala
@@ -17,7 +17,6 @@ import parallelai.spyglass.hbase.HBaseConstants.SourceMode
 import parallelai.spyglass.hbase.HBasePipeConversions
 import parallelai.spyglass.hbase.HBaseSource
 
-
 class HBaseCrossrefScoreJob(args: Args) extends JobBase(args) with
     HBasePipeConversions {
   val NoTitle = "NO TITLE" // Used for slug if title is empty or unparseable
@@ -29,6 +28,7 @@ class HBaseCrossrefScoreJob(args: Args) extends JobBase(args) with
   val grobidPipe : TypedPipe[(String, String, String)] = grobidSource
     .read
     .fromBytesWritable(new Fields("key", "tei_json"))
+    .debug
     .toTypedPipe[(String, String)]('key, 'tei_json)
     .map { entry =>
       val (key, json) = (entry._1, entry._2)
@@ -41,24 +41,24 @@ class HBaseCrossrefScoreJob(args: Args) extends JobBase(args) with
       val (slug, _, _) = entry
       slug != NoTitle
     }
+    .debug
+    .write(TypedTsv[(String, String, String)](args("output")))
+
+  /*
 
   val grobidGroup = grobidPipe
     .groupBy { case (slug, key, json) => slug }
-//    .debug
-
 
   val crossrefSource = TextLine(args("crossref-input"))
   val crossrefPipe : TypedPipe[(String, String)] = crossrefSource
     .read
     .toTypedPipe[String]('line)
     .map{ json : String =>
-//      val (offset, json) = entry
       HBaseCrossrefScore.crossrefToSlug(json) match {
         case Some(slug) => (slug, json)
         case None => (NoTitle, json)
       }
     }
-  .debug
     .filter { entry =>
       val (slug, json) = entry
       slug != NoTitle
@@ -77,7 +77,7 @@ class HBaseCrossrefScoreJob(args: Args) extends JobBase(args) with
         // TODO: For now, output it all.
         (slug, slug0, slug1, sha1, grobidJson, crossrefJson)}
       .write(TypedTsv[(String, String, String, String, String, String)](args("output")))
-
+   */
 
 }
 
diff --git a/scalding/src/test/scala/sandcrawler/HBaseCrossrefScoreTest.scala b/scalding/src/test/scala/sandcrawler/HBaseCrossrefScoreTest.scala
index dc96003..96c7770 100644
--- a/scalding/src/test/scala/sandcrawler/HBaseCrossrefScoreTest.scala
+++ b/scalding/src/test/scala/sandcrawler/HBaseCrossrefScoreTest.scala
@@ -178,18 +178,17 @@ class HBaseCrossrefScoreTest extends FlatSpec with Matchers {
     .arg("debug", "true")
     .source[Tuple](HBaseCrossrefScore.getHBaseSource(testTable, testHost),
       grobidSampleData.map(l => new Tuple(l.map(s => {new ImmutableBytesWritable(s)}):_*)))
-    .source(TextLine(input), List((
+    .source(TextLine(input), List(
       CrossrefString.replace("<<TITLE>>", "Title 1: TNG").replace("<<DOI>>", "DOI-0"),
       CrossrefString.replace("<<TITLE>>", "Title 1: TNG").replace("<<DOI>>", "DOI-0.5"),
       CrossrefString.replace("<<TITLE>>", "Title 1: TNG").replace("<<DOI>>", "DOI-0.75"),
-      CrossrefString.replace("<<TITLE>>", "Title 2: Rebooted").replace("<<DOI>>", "DOI-1"))))
-    .sink[(String, String, String, String, String,
-    String)](TypedTsv[(String, String, String, String, String, String)](output)) {
+      CrossrefString.replace("<<TITLE>>", "Title 2: Rebooted").replace("<<DOI>>", "DOI-1")))
+    .sink[(String, String, String)](TypedTsv[(String, String, String)](output)) {
       outputBuffer =>
-      /*
       it should "return a 3-element list" in {
         outputBuffer should have length 3
       }
+      /*
       it should "return the right first entry" in {
         val (slug, slug0, slug1, sha1, grobidJson, crossrefJson) = outputBuffer(0)
         slug shouldBe "title1"
-- 
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