From ed27bf6fb7afda158812c0822498bc7408572b8e Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Wed, 15 Apr 2020 12:42:42 -0700 Subject: COVID-19 chinese paper ingest --- python/scripts/covid2ingestrequest.py | 83 +++++++++++++++++++++++++++++++++++ 1 file changed, 83 insertions(+) create mode 100755 python/scripts/covid2ingestrequest.py (limited to 'python') diff --git a/python/scripts/covid2ingestrequest.py b/python/scripts/covid2ingestrequest.py new file mode 100755 index 0000000..33c425d --- /dev/null +++ b/python/scripts/covid2ingestrequest.py @@ -0,0 +1,83 @@ +#!/usr/bin/env python3 + +""" +Transform an unpaywall dump (JSON) into ingest requests. +""" + +import sys +import json +import argparse +import urlcanon + + +def canon(s): + parsed = urlcanon.parse_url(s) + return str(urlcanon.whatwg(parsed)) + + +def transform_cnki(obj): + + requests = [] + assert obj['cnki_id'] + + + requests = [] + requests.append({ + 'base_url': canon(obj['info_url']), + 'ingest_type': 'pdf', + 'link_source': 'cnki_covid19', + 'link_source_id': obj['cnki_id'], + 'ingest_request_source': 'scrape-covid19', + }) + if 'read_url' in obj: + requests.append({ + 'base_url': canon(obj['read_url']), + 'ingest_type': 'pdf', # actually HTML + 'link_source': 'cnki_covid19', + 'link_source_id': obj['cnki_id'], + 'ingest_request_source': 'scrape-covid19', + }) + + return requests + +def transform_wanfang(obj): + + assert obj['wanfang_id'] + return [{ + 'base_url': canon(obj['url']), + 'ingest_type': 'pdf', + 'link_source': 'wanfang_covid19', + 'link_source_id': obj['wanfang_id'], + 'ingest_request_source': 'scrape-covid19', + }] + + +def run(args): + for l in args.json_file: + if not l.strip(): + continue + row = json.loads(l) + + if 'wanfang_id' in row: + requests = transform_wanfang(row) or [] + elif 'cnki_id' in row: + requests = transform_cnki(row) or [] + else: + continue + for r in requests: + print("{}".format(json.dumps(r, sort_keys=True))) + +def main(): + parser = argparse.ArgumentParser( + formatter_class=argparse.ArgumentDefaultsHelpFormatter) + parser.add_argument('json_file', + help="COVID-19 metadata file to use", + type=argparse.FileType('r')) + subparsers = parser.add_subparsers() + + args = parser.parse_args() + + run(args) + +if __name__ == '__main__': + main() -- cgit v1.2.3