From be114d6a8e7bd51f7b4336cc1c5529ec2cc00f67 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Fri, 10 Jan 2020 16:05:38 -0800 Subject: more ingest HTML extraction hacks --- python/sandcrawler/html.py | 52 ++++++++++++++++++++++++++++++++++++++++------ 1 file changed, 46 insertions(+), 6 deletions(-) (limited to 'python') diff --git a/python/sandcrawler/html.py b/python/sandcrawler/html.py index 812335f..93eb28e 100644 --- a/python/sandcrawler/html.py +++ b/python/sandcrawler/html.py @@ -8,6 +8,7 @@ from bs4 import BeautifulSoup RESEARCHSQUARE_REGEX = re.compile(r'"url":"(https://assets.researchsquare.com/files/.{1,50}/v\d+/Manuscript.pdf)"') IEEEXPLORE_REGEX = re.compile(r'"pdfPath":"(/.*?\.pdf)"') OVID_JOURNAL_URL_REGEX = re.compile(r'journalURL = "(http.*)";') +SCIENCEDIRECT_BOUNCE_URL_REGEX = re.compile(r"window.location = '(http.*)';") def test_regex(): lines = """ @@ -17,6 +18,17 @@ def test_regex(): m = OVID_JOURNAL_URL_REGEX.search(lines) assert m.group(1) == "https://journals.lww.com/co-urology/fulltext/10.1097/MOU.0000000000000689" + lines = """ + window.onload = function () { + window.location = 'https://pdf.sciencedirectassets.com/320270/AIP/1-s2.0-S2590109519300424/main.pdf?X-Amz-Security-Token=IQoJb3JpZ2luX2VjEH0aCXVzLWVhc3QtMSJGMEQCICBF0dnrtKfpcs3T1kOjMS9w9gedqiLBrcbp4aKQSP8fAiAT9G426t6FWXHO2zPSXRFLq2eiqgbew2vkNKbcn87teyq9Awj1%2F%2F%2F%2F%2F%2F%2F%2F%2F%2F8BEAIaDDA1OTAwMzU0Njg2NSIMnZcTRhbvMwF%2F5PA5KpEDdN%2FDI4V%2BNMDWQDFeAdUc99Lyxak%2B6vhAsfCBCf8hhvrRpalz75e74%2FXMAQwMN9m6i98o0Ljv9od7cuQEy8t%2B0DLzjzX5n3%2FxmpttowhMUm1jc8tBniLKBjwhTyiSHwhdeaVZf6x2zCJ0EIOWMNJHp3iFEqpaFvkRZbC1KWK4XPNNKo72HCvXuG7xmGrdHByz91AP7UgIYCy4hT10fnM43gbOE4wW8fqpgnvwCId%2F2u8k4rQoCLBqLYZzqshCRm1DBbsXCQhTwDXiMC2Ek3f63yKgw7rRCAxvs0vqirG%2B4mJ6LADaztAFMtKDPfnd4e%2B7%2FvnKU2NeotrqrkRgOkIAoFumbQXf20ky6mKWyHBk%2FxirVp60vUcLQpUm2Pcp6ythYxUi9IJxRGX8EF6aV4UHuCpUDUE7o8N84KUXIedUpytUZx7Xoxfk9w%2BR3%2FgX4LEHfkrWgiFAS3bVxNGOeV7GTwcXdcAggbdCaiAe46dfv7DDedx0KhVKOPH7obfvShqd6TYc0BjrV4sx61594ZJ3%2FO0ws7Lj8AU67AF17%2B1NZ3Ugu%2BwG9Ys9s7OxG8E4kBJ58vEY1yuBOQK9y2we4%2FTGPuqSxCuezqA%2BseslXYP%2FRc%2FZL9xx%2FUYaSjZhk1p1mhojxgBrckJYU7d8c4ELMPmtVy6R1yd2VDUoawEU8SB7nbNnMKzqQ3RgGgqGJiELys6dt%2FIr%2BVhpqM%2FZT4zadvzs8P%2FLoGzUHJKNZt0f99wLvZilphV92E%2BOUnwC4wbg3i3af3zozULwgEr7T%2FX2VsyREgexlzk76qMALPn0lgnciUyyQXxyUWAilXYQ0mQdXefh9lFfycczvt0UEuarX9p1sMwl8Ve5aw%3D%3D&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20200110T210936Z&X-Amz-SignedHeaders=host&X-Amz-Expires=300&X-Amz-Credential=ASIAQ3PHCVTY23CMDBNC%2F20200110%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=b43525576e1a0fdbab581481a3fe6db2862cbb2c69f2860b70cc8d444ccd73d5&hash=ccd128dfe597e704224bdfb4b3358de29b2be5d95887c71076bdab1236ba9e42&host=68042c943591013ac2b2430a89b270f6af2c76d8dfd086a07176afe7c76c2c61&pii=S2590109519300424&tid=spdf-74468ebd-6be6-43ac-b294-ced86e8eea58&sid=f9676d658285a749c46b6d081d965bb12aa8gxrqa&type=client'; + refreshOriginalWindow(); + } + """ + url = "https://pdf.sciencedirectassets.com/320270/AIP/1-s2.0-S2590109519300424/main.pdf?X-Amz-Security-Token=IQoJb3JpZ2luX2VjEH0aCXVzLWVhc3QtMSJGMEQCICBF0dnrtKfpcs3T1kOjMS9w9gedqiLBrcbp4aKQSP8fAiAT9G426t6FWXHO2zPSXRFLq2eiqgbew2vkNKbcn87teyq9Awj1%2F%2F%2F%2F%2F%2F%2F%2F%2F%2F8BEAIaDDA1OTAwMzU0Njg2NSIMnZcTRhbvMwF%2F5PA5KpEDdN%2FDI4V%2BNMDWQDFeAdUc99Lyxak%2B6vhAsfCBCf8hhvrRpalz75e74%2FXMAQwMN9m6i98o0Ljv9od7cuQEy8t%2B0DLzjzX5n3%2FxmpttowhMUm1jc8tBniLKBjwhTyiSHwhdeaVZf6x2zCJ0EIOWMNJHp3iFEqpaFvkRZbC1KWK4XPNNKo72HCvXuG7xmGrdHByz91AP7UgIYCy4hT10fnM43gbOE4wW8fqpgnvwCId%2F2u8k4rQoCLBqLYZzqshCRm1DBbsXCQhTwDXiMC2Ek3f63yKgw7rRCAxvs0vqirG%2B4mJ6LADaztAFMtKDPfnd4e%2B7%2FvnKU2NeotrqrkRgOkIAoFumbQXf20ky6mKWyHBk%2FxirVp60vUcLQpUm2Pcp6ythYxUi9IJxRGX8EF6aV4UHuCpUDUE7o8N84KUXIedUpytUZx7Xoxfk9w%2BR3%2FgX4LEHfkrWgiFAS3bVxNGOeV7GTwcXdcAggbdCaiAe46dfv7DDedx0KhVKOPH7obfvShqd6TYc0BjrV4sx61594ZJ3%2FO0ws7Lj8AU67AF17%2B1NZ3Ugu%2BwG9Ys9s7OxG8E4kBJ58vEY1yuBOQK9y2we4%2FTGPuqSxCuezqA%2BseslXYP%2FRc%2FZL9xx%2FUYaSjZhk1p1mhojxgBrckJYU7d8c4ELMPmtVy6R1yd2VDUoawEU8SB7nbNnMKzqQ3RgGgqGJiELys6dt%2FIr%2BVhpqM%2FZT4zadvzs8P%2FLoGzUHJKNZt0f99wLvZilphV92E%2BOUnwC4wbg3i3af3zozULwgEr7T%2FX2VsyREgexlzk76qMALPn0lgnciUyyQXxyUWAilXYQ0mQdXefh9lFfycczvt0UEuarX9p1sMwl8Ve5aw%3D%3D&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20200110T210936Z&X-Amz-SignedHeaders=host&X-Amz-Expires=300&X-Amz-Credential=ASIAQ3PHCVTY23CMDBNC%2F20200110%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=b43525576e1a0fdbab581481a3fe6db2862cbb2c69f2860b70cc8d444ccd73d5&hash=ccd128dfe597e704224bdfb4b3358de29b2be5d95887c71076bdab1236ba9e42&host=68042c943591013ac2b2430a89b270f6af2c76d8dfd086a07176afe7c76c2c61&pii=S2590109519300424&tid=spdf-74468ebd-6be6-43ac-b294-ced86e8eea58&sid=f9676d658285a749c46b6d081d965bb12aa8gxrqa&type=client" + m = SCIENCEDIRECT_BOUNCE_URL_REGEX.search(lines) + assert m.group(1) == url + + def extract_fulltext_url(html_url, html_body): """ Takes an HTML document (and URL), assumed to be a landing page, and tries @@ -90,7 +102,7 @@ def extract_fulltext_url(html_url, html_body): m = RESEARCHSQUARE_REGEX.search(html_body.decode('utf-8')) if m: url = m.group(1) - assert len(url) < 1024 + assert len(url) < 4096 return dict(release_stage="manuscript", pdf_url=url, technique='publisher') # elseiver linking hub @@ -106,6 +118,16 @@ def extract_fulltext_url(html_url, html_body): url = url.split('?via')[0] return dict(next_url=url, technique="elsevier-linkinghub") + # sciencedirect PDF bounce page + # https://www.sciencedirect.com/science/article/pii/S2590109519300424/pdfft?md5=854f43a44de186eb58674b8e20631691&pid=1-s2.0-S2590109519300424-main.pdf + if '://www.sciencedirect.com/' in html_url and html_url.endswith(".pdf"): + # window.location = 'https://pdf.sciencedirectassets.com/320270/AIP/1-s2.0-S2590109519300424/main.pdf?X-Amz-Security-Token=[...]&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20200110T210936Z&X-Amz-SignedHeaders=host&X-Amz-Expires=300&X-Amz-Credential=ASIAQ3PHCVTY23CMDBNC%2F20200110%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=[...]&hash=[...]&host=[...]&pii=S2590109519300424&tid=spdf-74468ebd-6be6-43ac-b294-ced86e8eea58&sid=[...]&type=client'; + m = SCIENCEDIRECT_BOUNCE_URL_REGEX.search(html_body.decode('utf-8')) + if m: + url = m.group(1) + assert len(url) < 4000 + return dict(pdf_url=url, technique="sciencedirect-bounce") + # ieeexplore.ieee.org # https://ieeexplore.ieee.org/document/8730316 if '://ieeexplore.ieee.org/document/' in html_url: @@ -114,8 +136,8 @@ def extract_fulltext_url(html_url, html_body): m = IEEEXPLORE_REGEX.search(html_body.decode('utf-8')) if m: url = m.group(1) - assert len(url) < 1024 - return dict(release_stage="published", pdf_url=host_prefix+url, technique="publisher") + assert len(url) < 4096 + return dict(release_stage="published", pdf_url=host_prefix+url, technique="ieeexplore") # https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=8730313 if '://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber' in html_url: # HTML iframe like: @@ -152,7 +174,7 @@ def extract_fulltext_url(html_url, html_body): m = OVID_JOURNAL_URL_REGEX.search(html_body.decode('utf-8')) if m: url = m.group(1) - assert len(url) < 1024 + assert len(url) < 4096 return dict(next_url=url, technique='ovid') # osf.io @@ -170,7 +192,7 @@ def extract_fulltext_url(html_url, html_body): # wiley # https://onlinelibrary.wiley.com/doi/pdf/10.1111/1467-923X.12787 if "://onlinelibrary.wiley.com/doi/pdf/" in html_url: - if "/doi/pdfdirect/" in html_body: + if b"/doi/pdfdirect/" in html_body: next_url = html_url.replace('/doi/pdf/', '/doi/pdfdirect/') return dict(next_url=next_url, technique='wiley-pdfdirect') @@ -182,6 +204,24 @@ def extract_fulltext_url(html_url, html_body): if href: url = href['href'].strip() if "/pdf/" in url: - return dict(pdf_url=host_prefix+url, technique='publisher') + return dict(pdf_url=host_prefix+url, technique='publisher-href') + + # arxiv abstract pages + if "://arxiv.org/abs/" in html_url: + url = html_url.replace("/abs/", "/pdf/") + return dict(pdf_url=url, technique='arxiv-url') + + # american archivist (OA) + # https://americanarchivist.org/doi/abs/10.17723/aarc.62.2.j475270470145630 + if "://americanarchivist.org/doi/abs/" in html_url: + # + hrefs = soup.find_all('a', attrs={"_target":"blank"}) + for href in hrefs: + url = href['href'].strip() + if "/doi/pdf/" in url: + if url.startswith('http'): + return dict(pdf_url=url, technique='publisher-href') + elif url.startswith('/'): + return dict(pdf_url=host_prefix+url, technique='publisher-href') return dict() -- cgit v1.2.3